Evidence map›Paper›PMID 30102380›Full record

ArticleHuman molecular genetics2018

Loss of hierarchical imprinting regulation at the Prader-Willi/Angelman syndrome locus in human iPSCs.

Duarte Pólvora-Brandão, Mariana Joaquim, Inês Godinho, Domenico Aprile, Ana Rita Álvaro, Isabel Onofre, Ana Cláudia Raposo, Luís Pereira de Almeida, Sofia T Duarte, Simão T da Rocha

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Stem cell models of Angelman syndrome.Frontiers in cell and developmental biology · 2023
    Review
  10. Review
  11. Review
  12. Article
  13. Conservation of Imprinting and Methylation ofAnimals : an open access journal from MDPI · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Duarte Pólvora-BrandãoInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
Mariana JoaquimInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
Inês GodinhoInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
Domenico AprileInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
Ana Rita ÁlvaroCNC - Center for Neurosciences and Cell Biology, University of Coimbra, Coimbra, Portugal.
Isabel OnofreCNC - Center for Neurosciences and Cell Biology, University of Coimbra, Coimbra, Portugal.
Ana Cláudia RaposoInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
Luís Pereira de AlmeidaCNC - Center for Neurosciences and Cell Biology, University of Coimbra, Coimbra, Portugal.
Sofia T DuarteInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
Simão T da RochaInstituto de Medicina Molecular João Lobo Antunes, Universidade de Lisboa, Lisboa, Portugal.
University of Lisbon · PTUniversity of Coimbra · PTHospital de Dona Estefânia · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human chr15q11-q13 imprinted cluster is linked to several disorders, including Prader-Willi (PWS) and Angelman (AS) syndromes. Recently, disease modeling approaches based on induced pluripotent stem cells (iPSCs) have been used to study these syndromes. A concern regarding the use of these cells for imprinted disease modeling is the numerous imprinting defects found in many iPSCs. Here, by reprogramming skin fibroblasts from a control and AS individuals, we generated several iPSC lines and addressed the stability of imprinting status across the PWS/AS domain. We focused on three important regulatory DNA elements which are all differentially methylated regions (DMRs), methylated on the maternal allele: the PWS imprinting center (PWS-IC), which is a germline DMR and the somatic NDN and MKRN3 DMRs, hierarchically controlled by PWS-IC. Normal PWS-IC methylation pattern was maintained in most iPSC lines; however, loss of maternal methylation in one out of five control iPSC lines resulted in a monoallelic to biallelic switch for many imprinted genes in this domain. Surprisingly, MKRN3 DMR was found aberrantly hypermethylated in all control and AS iPSCs, regardless of the methylation status of the PWS-IC master regulator. This suggests a loss of hierarchical control of imprinting at PWS/AS region. We confirmed these results in established iPSC lines derived using different reprogramming procedures. Overall, we show that hierarchy of imprinting control in donor cells might not apply to iPSCs, accounting for their spectrum of imprinting alterations. Such differences in imprinting regulation should be taken into consideration for the use of iPSCs in disease modeling.

Indexed as

AllelesAngelman SyndromeCellular ReprogrammingChromosomes, Human, Pair 15DNA MethylationFibroblastsGenomic ImprintingGerm CellsHumansInduced Pluripotent Stem CellsPrader-Willi SyndromePromoter Regions, GeneticRegulatory Elements, TranscriptionalRibonucleoproteinsSkinTumor Suppressor ProteinsMKRN3 protein, humanNDN protein, humanRibonucleoproteinsTumor Suppressor ProteinsUbiquitin-Protein Ligases

Identifiers

PMID30102380
PMCPMC6240739
OpenAlexW2886364416

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.