Evidence map›Paper›PMID 30100805›Full record

ArticleBreeding science2018

Genome re-sequencing, SNP analysis, and genetic mapping of the parental lines of a commercial F

Daniel J Shea, Motoki Shimizu, Etsuko Itabashi, Naomi Miyaji, Junji Miyazaki, Kenji Osabe, Makoto Kaji, Keiichi Okazaki, Ryo Fujimoto

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Breeding science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Daniel J SheaGraduate School of Science and Technology, Niigata University, Ikarashi-ninocho, Niigata 950-2181, Japan.
Motoki ShimizuIwate Biotechnology Research Center, Narita, Kitakami, Iwate 024-0003, Japan.
Etsuko ItabashiInstitute of Vegetable and Floriculture Science, NARO, Kusawa, Ano, Tsu, Mie 514-2392, Japan.
Naomi MiyajiGraduate School of Agricultural Science, Kobe University, Rokkodai, Nada-ku, Kobe, Hyogo 657-8501, Japan.
Junji MiyazakiCentre for AgriBioscience, Department of Animal, Plant and Soil Sciences, La Trobe University, Melbourne VIC Australia.
Kenji OsabePlant Epigenetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna-son, Okinawa 904-0495, Japan.
Makoto KajiWatanabe Seed Co., Ltd., Machiyashiki, Misato-cho, Miyagi 987-0003, Japan.
Keiichi OkazakiGraduate School of Science and Technology, Niigata University, Ikarashi-ninocho, Niigata 950-2181, Japan.
Ryo FujimotoGraduate School of Agricultural Science, Kobe University, Rokkodai, Nada-ku, Kobe, Hyogo 657-8501, Japan.
Kobe University · JPNiigata University · JPInstitute of Vegetable and Floriculture Science · JPIwate Biotechnology Research Center · JPLa Trobe University · AUOkinawa Institute of Science and Technology Graduate University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genome-wide characterization of single nucleotide polymorphism (SNP) between cultivars or between inbred lines contributes to the creation of genetic markers that are important for plant breeding. Functional markers derived from polymorphisms within genes that affect phenotypic variation are especially valuable in plant breeding. Here, we report on the genome re-sequencing and analysis of the two parental inbred lines of the commercial F

Indexed as

Brassica rapaChinese cabbagelinkage mapre-sequenceSNP

Identifiers

PMID30100805
PMCPMC6081294
OpenAlexW2810768794

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.