Evidence map›Paper›PMID 30100616›Full record

ArticleGenes and immunity2019

Fine-mapping analysis of a chromosome 2 region linked to resistance to Mycobacterium tuberculosis infection in Uganda reveals potential regulatory variants.

Robert P Igo, Noémi B Hall, LaShaunda L Malone, Jacob B Hall, Barbara Truitt, Feiyou Qiu, Li Tao, Ezekiel Mupere, Audrey Schnell, Thomas R Hawn and 4 more

Abstract read
In one paragraph

Article in Genes and immunity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Interaction betweenPathogens (Basel, Switzerland) · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Phenotype Definition for "Resisters" toFrontiers in immunology · 2021
    Review
  13. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  14. Article
  15. Genetic Resistance toFrontiers in immunology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Robert P IgoDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Noémi B HallDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
LaShaunda L MaloneTuberculosis Research Unit (TBRU), Case Western Reserve University, Cleveland, OH, USA.
Jacob B HallDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Barbara TruittDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Feiyou QiuDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Li TaoDepartment of Internal Medicine, Harbor-UCLA Medical Center, Los Angeles, CA, USA.
Ezekiel MupereDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Audrey SchnellDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Thomas R HawnDepartment of Medicine, University of Washington, Seattle, WA, USA.
William S BushDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Moses JolobaSchool for Biomedical Sciences, College of Health Sciences, Makerere University, Kampala, Uganda.
W Henry BoomTuberculosis Research Unit (TBRU), Case Western Reserve University, Cleveland, OH, USA.
Catherine M SteinDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA. cmj7@case.edu.ORCID http://orcid.org/0000-0002-9763-5023
Case Western Reserve University · USHarbor–UCLA Medical Center · USMakerere University · UGMUJHU Research Collaboration · UGMulago Hospital · UGUniversity of Washington · US

Funding

BIOMETRIC-GENETIC ANALYSIS OF CARDIOVASCULAR DISEASET32HL007567 · NHLBI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ZHU, XIAOFENG · 1985 to 2021
$6.0M
Tuberculosis Prevention Research Unit /TBRU/-266095383N01AI095383 · NIAID · CASE WESTERN RESERVE UNIVERSITY · 2000 to 2005
$5.6M
Pathway analysis of tuberculosis pathogenesisR01HL096811 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI STEIN, CATHERINE MARIE · 2009 to 2013
$2.2M
NHLBI NIH HHS R01 HL096811NHLBI NIH HHS T32 HL007567NIAID NIH HHS N01 AI070022NIAID NIH HHS N01 AI095383U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL096811U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) T32HL007567U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) HHSN266200700022C/N01-AI70022U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) N01-AI95383
6 · The paper itself

Abstract

Tuberculosis (TB) is a major public health burden worldwide, and more effective treatment is sorely needed. Consequently, uncovering causes of resistance to Mycobacterium tuberculosis (Mtb) infection is of special importance for vaccine design. Resistance to Mtb infection can be defined by a persistently negative tuberculin skin test (PTST-) despite living in close and sustained exposure to an active TB case. While susceptibility to Mtb is, in part, genetically determined, relatively little work has been done to uncover genetic factors underlying resistance to Mtb infection. We examined a region on chromosome 2q previously implicated in our genomewide linkage scan by a targeted, high-density association scan for genetic variants enhancing PTST- in two independent Ugandan TB household cohorts (n = 747 and 471). We found association with SNPs in neighboring genes ZEB2 and GTDC1 (peak meta p = 1.9 × 10

Indexed as

AdolescentBody Mass IndexChildChromosomes, Human, Pair 2Disease ResistanceFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGlycosyltransferasesHistone Deacetylase 1HIV InfectionsHumansMalePolymorphism, Single NucleotideSignal TransductionTuberculin TestGlycosyltransferasesGTDC1 protein, humanHDAC1 protein, humanHistone Deacetylase 1ZEB2 protein, humanZinc Finger E-box Binding Homeobox 2

Identifiers

PMID30100616
PMCPMC6374218
OpenAlexW2886522840

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.