Evidence map›Paper›PMID 30100265›Full record

ArticleMolecular cell2018

In Vivo Evidence for ATPase-Dependent DNA Translocation by the Bacillus subtilis SMC Condensin Complex.

Xindan Wang, Anna C Hughes, Hugo B Brandão, Benjamin Walker, Carrie Lierz, Jared C Cochran, Martha G Oakley, Andrew C Kruse, David Z Rudner

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cohesin ring gates are specialized for meiotic cell division.Journal of molecular cell biology · 2025
    Article
  6. Article
  7. Article
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  9. Article
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  11. Review
  12. Cohesin organizes 3D DNA contacts surrounding active enhancers inbioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Chromosome remodelling by SMC/Condensin inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xindan WangDepartment of Biology, Indiana University, Bloomington, IN 47405, USA; Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: xindan@indiana.edu.
Anna C HughesDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Hugo B BrandãoGraduate Program in Biophysics, Harvard University, Cambridge, MA 02138, USA.
Benjamin WalkerDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.
Carrie LierzDepartment of Chemistry, Indiana University, Bloomington, IN 47405, USA.
Jared C CochranDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.
Martha G OakleyDepartment of Chemistry, Indiana University, Bloomington, IN 47405, USA.
Andrew C KruseDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
David Z RudnerDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: rudner@hms.harvard.edu.
Indiana University Bloomington · USHarvard University · US

Funding

Chromosome Dynamics in Bacillus SubtillsR01GM086466 · NIGMS · HARVARD MEDICAL SCHOOL · PI RUDNER, DAVID Z · 2009 to 2021
$4.2M
Membrane Remodeling and Protein Trafficking in BacteriaR01GM073831 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RUDNER, DAVID Z · 2005 to 2014
$3.4M
NIGMS NIH HHS R01 GM073831NIGMS NIH HHS R01 GM086466
6 · The paper itself

Abstract

Structural maintenance of chromosomes (SMC) complexes shape the genomes of virtually all organisms, but how they function remains incompletely understood. Recent studies in bacteria and eukaryotes have led to a unifying model in which these ring-shaped ATPases act along contiguous DNA segments, processively enlarging DNA loops. In support of this model, single-molecule imaging experiments indicate that Saccharomyces cerevisiae condensin complexes can extrude DNA loops in an ATP-hydrolysis-dependent manner in vitro. Here, using time-resolved high-throughput chromosome conformation capture (Hi-C), we investigate the interplay between ATPase activity of the Bacillus subtilis SMC complex and loop formation in vivo. We show that point mutants in the SMC nucleotide-binding domain that impair but do not eliminate ATPase activity not only exhibit delays in de novo loop formation but also have reduced rates of processive loop enlargement. These data provide in vivo evidence that SMC complexes function as loop extruders.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateBacillus subtilisBacterial ProteinsChromosomes, BacterialDNADNA-Binding ProteinsHydrolysisMultiprotein ComplexesPoint MutationProtein BindingSaccharomyces cerevisiaeSingle Molecule ImagingTranslocation, GeneticAdenosine TriphosphatasesAdenosine TriphosphateBacterial Proteinscondensin complexesDNADNA-Binding ProteinsMultiprotein Complexescohesincondensinloop extrusionParBSMCTAD

Identifiers

PMID30100265
PMCPMC6591583
OpenAlexW2885168066

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.