Evidence map›Paper›PMID 30099988›Full record

ArticleStructure (London, England : 1993)2018

Structural Basis for MARK1 Kinase Autoinhibition by Its KA1 Domain.

Ryan P Emptage, Mark A Lemmon, Kathryn M Ferguson, Ronen Marmorstein

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Mechanisms of growth-dependent regulation of the Gin4 kinase.bioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Spatiotemporal regulation of MELK during mitosis.Frontiers in cell and developmental biology · 2024
    Article
  9. Allosteric regulation and inhibition of protein kinases.Biochemical Society transactions · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Ryan P EmptageDepartment of Biochemistry and Biophysics and the Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: emptage@upenn.edu.
Mark A LemmonDepartment of Pharmacology and Cancer Biology Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
Kathryn M FergusonDepartment of Pharmacology and Cancer Biology Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
Ronen MarmorsteinDepartment of Biochemistry and Biophysics and the Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: marmor@upenn.edu.

Funding

Targeting the MAP and PI3 Kinase Pathways in MelanomaP01CA114046 · NCI · WISTAR INSTITUTE · PI HERLYN, MEENHARD F, WEERARATNA, ASHANI T · 2008 to 2023
$37.1M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
HEMATOPOIESIS TRAINING GRANTT32DK007780 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI TONG, WEI · 1999 to 2023
$6.7M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Investigating KA1 domain-mediated regulation of MARK/PAR1 kinasesF32GM115098 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EMPTAGE, RYAN P. · 2015 to 2017
$109k
NCI NIH HHS P01 CA114046NCRR NIH HHS S10 RR029205NIDDK NIH HHS T32 DK007780NIGMS NIH HHS F32 GM115098NIGMS NIH HHS P41 GM103403
6 · The paper itself

Abstract

The kinase associated-1 (KA1) domain is found at the C-terminus of multiple Ser/Thr protein kinases from yeast to humans, and has been assigned autoinhibitory, membrane-binding, and substrate-targeting roles. Here, we report the crystal structure of the MARK1 kinase/UBA domain bound to its autoinhibitory KA1 domain, revealing an unexpected interface at the αD helix and contacts with both the N- and C-lobes of the kinase domain. We confirm the binding interface location in kinetic studies of variants mutated on the kinase domain surface. Together with other MARK kinase structures, the data implicate that the KA1 domain blocks peptide substrate binding. The structure highlights the kinase-specific autoinhibitory binding modes of different KA1 domains, and provides potential new avenues by which to intervene therapeutically in Alzheimer's disease and cancers in which MARK1 or related kinases are implicated.

Indexed as

Binding SitesCheckpoint Kinase 1Cloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGenetic VectorsHumansKineticsModels, MolecularMutationPeptidesProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsCheckpoint Kinase 1CHEK1 protein, humanMARK1 protein, humanPeptidesProtein Serine-Threonine KinasesRecombinant Proteinsactivation segmentautoinhibitionC-terminal domaininhibitory mechanismMARK1serine/threonine protein kinasestructural biologyTau proteinαD helix

Identifiers

PMID30099988
PMCPMC6092042

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.