Evidence map›Paper›PMID 30099644›Full record

ArticleDocumenta ophthalmologica. Advances in ophthalmology2018

A novel mutation in the PRPF31 in a North Indian adRP family with incomplete penetrance.

Sofia Bhatia, Shiwali Goyal, Indu R Singh, Daljit Singh, Vanita Vanita

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Article in Documenta ophthalmologica. Advances in ophthalmology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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  9. Review
  10. Novel REEP6 gene mutation associated with autosomal recessive retinitis pigmentosa.Documenta ophthalmologica. Advances in ophthalmology · 2020
    Article
  11. Review
  12. A CombinedFrontiers in genetics · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Sofia BhatiaDepartment of Human Genetics, Guru Nanak Dev University (GNDU), Amritsar, Punjab, 143005, India.
Shiwali GoyalDepartment of Human Genetics, Guru Nanak Dev University (GNDU), Amritsar, Punjab, 143005, India.
Indu R SinghDr. Daljit Singh Eye Hospital, Amritsar, Punjab, India.
Daljit SinghDr. Daljit Singh Eye Hospital, Amritsar, Punjab, India.
Vanita VanitaDepartment of Human Genetics, Guru Nanak Dev University (GNDU), Amritsar, Punjab, 143005, India. vanita_kumar@yahoo.com.ORCID http://orcid.org/0000-0003-2251-6641
Guru Nanak Dev University · INSatguru Partap Singh Hospital · IN

Funding

Department of Biotechnology , Ministry of Science and Technology BT/IN/German/13/VK/2010 IND 10/036
6 · The paper itself

Abstract

purposeTo identify the underlying genetic defect for non-syndromic autosomal dominant retinitis pigmentosa (adRP) with incomplete penetrance in a North Indian family.

methodsFamily history and clinical data were collected. Linkage analysis using 72 fluorescently labeled microsatellite markers flanking all the 26 candidate genes known for adRP was performed. Mutation screening in candidate gene at the mapped region was performed by bi-directional DNA sequencing.

resultsPositive two-point lod scores > 1.0 (θ = 0.000) suggestive of linkage were obtained with markers D19S572, D19S927 and D19S926 at 19q13.42, in the vicinity of PRPF31 gene. Mutation screening in all the 14 exonic regions and intron-exon boundaries of PRPF31 revealed a novel change, i.e. c.896G>A (p.Cys299Tyr) in exon eight. The observed change segregated in heterozygous form in all the six affected members and in three carriers, consistent with incomplete penetrance. This substitution was not observed in tested 15 unaffected members and in 200 ethnically matched controls.

conclusionPresent study describes mapping of a locus for non-syndromic adRP with incomplete penetrance at 19q13.42 in a North Indian family and identifies a novel missense mutation (p.Cys299Tyr) in PRPF31 localized at the mapped interval. The observed substitution lies in the NOP domain of PRPF31 that exhibit RNA and protein binding surfaces and thus may interfere in the formation of spliceosome complex. Due to p.Cys299Tyr substitution hydrogen bonds are generated, which may result in conformational changes and PRPF31 protein deformity. Present findings further substantiate the role of PRPF31 in adRP with incomplete penetrance and expand the mutation spectrum of PRPF31.

Indexed as

Mutation, MissensePenetranceAdolescentAdultAgedAsian PeopleChildElectroretinographyExonsEye ProteinsFemaleGenetic LinkageHumansMaleMiddle AgedNight BlindnessEye ProteinsPRPF31 protein, humanAutosomal dominant retinitis pigmentosaLinkage analysisMutation screeningPRPF31RP11 locusTwo-point lod scores

Identifiers

PMID30099644
OpenAlexW2885683872

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.