Evidence map›Paper›PMID 30098214›Full record

ArticleImmunology2018

YY1 binds to the E3' enhancer and inhibits the expression of the immunoglobulin κ gene via epigenetic modifications.

Xiaorong Zhou, Weiwei Xian, Jie Zhang, Yiqing Zhu, Xiaoyi Shao, Yu Han, Yue Qi, Xiaoling Ding, Xiaoying Wang

Open access · bronzeAbstract read
In one paragraph

Article in Immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.International journal of molecular sciences · 2021
    Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaorong ZhouDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.
Weiwei XianDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.
Jie ZhangDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.
Yiqing ZhuDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.
Xiaoyi ShaoDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.
Yu HanDepartment of Occupational Medicine and Environmental Hygiene, School of Public Health, Nantong University, Nantong, Jiangsu, China.
Yue QiDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.
Xiaoling DingDepartment of Gastroenterology, The Affiliated Hospital of Nantong University, Nantong, Jiangsu, China.
Xiaoying WangDepartment of Immunology, School of Medicine, Nantong University, Nantong, Jiangsu, China.ORCID 0000-0002-8225-2855
Nantong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rearrangement and expression of immunoglobulin genes are regulated by enhancers and their binding transcriptional factors that activate or suppress the activities of the enhancers. The immunoglobulin κ (Igκ) gene locus has three important enhancers: the intrinsic enhancer (Ei), 3' enhancer (E3'), and distal enhancer (Ed). Ei and E3' are both required for Igκ gene rearrangement during early stages of B-cell development, whereas optimal expression of the rearranged Igκ gene relies on both E3' and Ed. The transcription factor YY1 affects the expression of many genes involved in B-cell development, probably by mediating interactions between their enhancers and promoters. Herein, we found that YY1 binds to the E3' enhancer and suppresses Igκ expression in B lymphoma cells by epigenetically modifying the enhancer. Knocking down YY1 enhanced Igκ expression, which was associated with increased levels of E2A (encoded by the TCF3 gene) and its binding to the E3' enhancer. Moreover, in germinal centre B cells and plasma cells, YY1 expression was reversely associated with Igκ levels, implying that YY1 might facilitate antibody affinity maturation in germinal centre B cells through the transient attenuation of Igκ expression.

Indexed as

Basic Helix-Loop-Helix ProteinsB-LymphocytesCell Line, TumorEnhancer Elements, GeneticGerminal CenterHEK293 CellsHumansImmunoglobulin kappa-ChainsLymphoma, B-CellPromoter Regions, GeneticRNA InterferenceRNA, Small InterferingTranscription, GeneticYY1 Transcription FactorBasic Helix-Loop-Helix ProteinsImmunoglobulin kappa-ChainsRNA, Small InterferingTCF3 protein, humanYY1 protein, humanYY1 Transcription FactorE2AE3′ enhancerepigenetic modificationIgκ geneYY1

Identifiers

PMID30098214
PMCPMC6231012
OpenAlexW2887612820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.