Evidence map›Paper›PMID 30097616›Full record

ArticleEuropean journal of human genetics : EJHG2018

Characterization of three ciliopathy pedigrees expands the phenotype associated with biallelic C2CD3 variants.

Nicole J Boczek, Katharina Hopp, Lacey Benoit, Daniel Kraft, Margot A Cousin, Patrick R Blackburn, Charles D Madsen, Gavin R Oliver, Asha A Nair, Jie Na and 5 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in European journal of human genetics : EJHG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Impact of integrated translational research on clinical exome sequencing.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  10. Article
  11. Review
  12. Centriolar Protein C2cd3 Is Required for Craniofacial Development.Frontiers in cell and developmental biology · 2021
    Article
  13. Synergistic Genetic Interactions betweenJournal of the American Society of Nephrology : JASN · 2019
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Nicole J BoczekCenter for Individualized Medicine, Mayo Clinic, Rochester, MN, USA.
Katharina HoppDivision of Renal Diseases and Hypertension, University of Colorado Denver, Aurora, CO, USA.ORCID http://orcid.org/0000-0002-2420-2358
Lacey BenoitDivision of Medical Genetics, Royal University Hospital, Saskatoon, Canada.
Daniel KraftDepartment of Biochemical Genetics, Mayo Clinic, Rochester, MN, USA.
Margot A CousinCenter for Individualized Medicine, Mayo Clinic, Rochester, MN, USA.
Patrick R BlackburnCenter for Individualized Medicine, Mayo Clinic, Rochester, MN, USA.ORCID http://orcid.org/0000-0003-0658-1275
Charles D MadsenDivision of Nephrology and Hypertension, Mayo Clinic, Rochester, MN, USA.
Gavin R OliverCenter for Individualized Medicine, Mayo Clinic, Rochester, MN, USA.
Asha A NairDivision of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA.
Jie NaCenter for Individualized Medicine, Mayo Clinic, Rochester, MN, USA.
Diana W BianchiDepartment of Pediatrics, Obstetrics & Gynecology, Tufts University, School of Medicine, Boston, MA, USA.
Geoffrey BeekDepartment of Clinical Genomics, Mayo Clinic, Rochester, MN, USA.
Peter C HarrisDivision of Nephrology and Hypertension, Mayo Clinic, Rochester, MN, USA.
Pavel PichurinDepartment of Clinical Genomics, Mayo Clinic, Rochester, MN, USA.
Eric W KleeCenter for Individualized Medicine, Mayo Clinic, Rochester, MN, USA. Klee.eric@mayo.edu.
Mayo Clinic · USMayo Clinic in Florida · USRoyal University Hospital · CATufts University · US

Funding

Pilot and FeasibilityP30DK090728 · NIDDK · MAYO CLINIC ROCHESTER · PI ROMERO, MICHAEL F. · 2010 to 2019
$11.8M
Transgenic and Knockout Models of ADPKDR01DK059597 · NIDDK · MAYO CLINIC ROCHESTER · PI Peter C. Harris · 2002 to 2026
$9.5M
NIDDK NIH HHS P30 DK090728NIDDK NIH HHS R01 DK059597
6 · The paper itself

Abstract

Whole exome sequencing (WES) is utilized in diagnostic odyssey cases to identify the underlying genetic cause associated with complex phenotypes. Recent publications suggest that WES reveals the genetic cause in ~25% of these cases and is most successful when applied to children with neurological disease. The residual 75% of cases remain genetically elusive until more information becomes available in the literature or functional studies are pursued. WES performed on three families with presumed ciliopathy diagnoses, including orofaciodigital (OFD) syndrome, fetal encephalocele, or Joubert-related disorder, identified compound heterozygous variants in C2CD3. Biallelic variants in C2CD3 have previously been associated with ciliopathies, including OFD syndrome type 14 (OFD14; MIM: 615948). As three of the six identified variants were predicted to affect splicing, exon-skipping analysis using either RNA sequencing or PCR-based methods were completed to determine the pathogenicity of these variants, and showed that each of the splicing variants led to a frameshifted protein product. Using these studies in combination with the 2015 ACMG guidelines, each of the six identified variants were classified as either pathogenic or likely pathogenic, and are therefore likely responsible for our patients' phenotypes. Each of the families had a distinct clinical phenotype and severity of disease, extending from lethal to viable. These findings highlight that there is a broad phenotypic spectrum associated with C2CD3-mediated disease and not all patients present with the typical features of OFD14.

Indexed as

PhenotypeAborted FetusAdolescentAdultChild, PreschoolCiliopathiesFemaleHumansInfantMaleMicrotubule-Associated ProteinsMutationOrofaciodigital SyndromesPedigreeRNA SplicingC2cd3 protein, humanMicrotubule-Associated Proteins

Identifiers

PMID30097616
PMCPMC6244354
OpenAlexW2885830105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.