ArticleScientific reports2018
Genome-wide association study and genomic prediction using parental and breeding populations of Japanese pear (Pyrus pyrifolia Nakai).
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- Chromosome-scale genome assembly and genomic prediction of essential oil compounds in Atractylodes lancea for genomics-assisted breeding.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026Article
- GWAS-assisted genomic selection for achieving high-precision early sex prediction in Populus deltoides.The plant genome · 2026Article
- Haplotype bias detection using pedigree-based transmission simulation: traces of selection that occurred in apple breeding.Horticulture research · 2026Article
- Whole-Genome Resequencing Provides Novel Insights Into the Genetic Diversity, Population Structure, and Patterns of Runs of Homozygosity in Mud Crab (Evolutionary applications · 2025Article
- Genome-wide association studies revealed partial genetic links between early vigour and precocity in macadamia.Horticulture research · 2025Article
- Contribution of Range-Wide and Short-Scale Chemical Soil Variation to Local Adaptation in a Tropical Montane Forest Tree.Evolutionary applications · 2025Article
- Using genotype imputation to integrate Canola populations for genome-wide association and genomic prediction of blackleg resistance.BMC genomics · 2025Article
- Phenotypic simulation for fruit-related traits in FMolecular genetics and genomics : MGG · 2025Article
- Increased genomic predictive ability in mango using GWAS-preselected variants and fixed-effect SNPs.Frontiers in plant science · 2025Article
- Genomic selection for crop improvement in fruits and vegetables: a systematic scoping review.Molecular breeding : new strategies in plant improvement · 2024Article
- Genomic region and origin for selected traits during differentiation of small-fruit cultivars in Japanese apricot (Prunus mume).Molecular genetics and genomics : MGG · 2023Article
- Genetic diversity, population structure, and genome-wide association analysis of ginkgo cultivars.Horticulture research · 2023Article
- Multiple-statistical genome-wide association analysis and genomic prediction of fruit aroma and agronomic traits in peaches.Horticulture research · 2023Article
- Boosting grapevine breeding for climate-smart viticulture: from genetic resources to predictive genomics.Frontiers in plant science · 2023Review
- A bulked segregant analysis tool for out-crossing species (BSATOS) and QTL-based genomics-assisted prediction of complex traits in apple.Journal of advanced research · 2022Article
- QTL Analysis and CAPS Marker Development Linked with Russet in Pear (Plants (Basel, Switzerland) · 2022Article
- Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Pear genetics: Recent advances, new prospects, and a roadmap for the future.Horticulture research · 2022Article
- Genome-Wide Association Analyses Track Genomic Regions for Resistance toFrontiers in plant science · 2022Article
- Dissecting Breeders' SenseFrontiers in plant science · 2022Article
Corrections and comments
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9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Breeding of fruit trees is hindered by their large size and long juvenile period. Genome-wide association study (GWAS) and genomic selection (GS) are promising methods for circumventing this hindrance, but preparing new large datasets for these methods may not always be practical. Here, we evaluated the potential of breeding populations evaluated routinely in breeding programs for GWAS and GS. We used a pear parental population of 86 varieties and breeding populations of 765 trees from 16 full-sib families, which were phenotyped for 18 traits and genotyped for 1,506 single nucleotide polymorphisms (SNPs). The power of GWAS and accuracy of genomic prediction were improved when we combined data from the breeding populations and the parental population. The accuracy of genomic prediction was improved further when full-sib data of the target family were available. The results suggest that phenotype data collected in breeding programs can be beneficial for GWAS and GS when they are combined with genome-wide marker data. The potential of GWAS and GS will be further extended if we can build a system for routine collection of the phenotype and marker genotype data for breeding populations.
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