Evidence map›Paper›PMID 30097557›Full record

ArticleJournal of cell science2018

Ivy1 is a negative regulator of Gtr-dependent TORC1 activation.

Natalia V Varlakhanova, Bryan A Tornabene, Marijn G J Ford

Abstract read
In one paragraph

Article in Journal of cell science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Establishing spatial control over TORC1 signaling.The Journal of cell biology · 2022
    Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Natalia V VarlakhanovaDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, United States of America.ORCID 0000-0002-9776-4423
Bryan A TornabeneDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, United States of America.
Marijn G J FordDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, United States of America marijn@pitt.edu.ORCID 0000-0002-9115-4413

Funding

The Roles of the Dynamin-Related Protein Vps1 and the ESCRT Complex in MicroautophagyR01GM120102 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FORD, MARIJN GERARD JOHANNES · 2016 to 2020
$1.5M
NIGMS NIH HHS R01 GM120102
6 · The paper itself

Abstract

The highly conserved TORC1 complex controls cell growth in response to nutrients, especially amino acids. The EGO complex activates TORC1 in response to glutamine and leucine. Here, we demonstrate that the I-BAR domain-containing protein Ivy1 colocalizes with Gtr1 and Gtr2, a heterodimer of small GTPases that are part of the EGO complex. Ivy1 is a negative regulator of Gtr-induced TORC1 activation, and is contained within puncta associated with the vacuolar membrane in cells grown in nutrient-rich medium or after brief nitrogen starvation. Addition of glutamine to nitrogen-starved cells leads to dissipation of Ivy1 puncta and redistribution of Ivy1 throughout the vacuolar membrane. Continued stimulation with glutamine results in concentration of Ivy1 within vacuolar membrane invaginations and its spatial separation from the EGO complex components Gtr1 and Gtr2. Disruption of vacuolar membrane invagination is associated with persistent mislocalization of Ivy1 across the vacuolar membrane and inhibition of TORC1 activity. Together, our findings illustrate a novel negative-feedback pathway that is exerted by Ivy1 on Gtr-dependent TORC1 signaling and provide insight into a potential molecular mechanism underlying TORC1 activation by vacuolar membrane remodeling.

Indexed as

Carrier ProteinsDimerizationGlutamineIntracellular MembranesMonomeric GTP-Binding ProteinsProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsVacuolesCarrier ProteinsGlutamineGtr1 protein, S cerevisiaeGTR2 protein, S cerevisiaeIVY1 protein, S cerevisiaeMonomeric GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsTORC1 protein complex, S cerevisiaeTranscription FactorsEGO complexGtr1Gtr2Ivy1MicroautophagyTORC1Vps1

Identifiers

PMID30097557
PMCPMC6140320

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.