Evidence map›Paper›PMID 30097532›Full record

ArticleMolecular & cellular proteomics : MCP2018

Glycomics@ExPASy: Bridging the Gap.

Julien Mariethoz, Davide Alocci, Alessandra Gastaldello, Oliver Horlacher, Elisabeth Gasteiger, Miguel Rojas-Macias, Niclas G Karlsson, Nicolle H Packer, Frédérique Lisacek

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Glycoscience data content in the NCBI Glycans and PubChem.Analytical and bioanalytical chemistry · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. UniCarb-DB: An MS/MS Experimental Glycomic Fragmentation Database.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  15. Article
  16. Article
  17. Enhanced Detection of ChargedAnalytical chemistry · 2023
    Article
  18. Review
  19. Review
  20. #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol.The international journal of high performance computing applications · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Julien MariethozFrom the ‡Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Davide AlocciFrom the ‡Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Alessandra GastaldelloFrom the ‡Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Oliver HorlacherFrom the ‡Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.ORCID 0000-0003-1826-4509
Elisabeth Gasteiger¶Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Miguel Rojas-Macias‖Glyco Inflammatory Group, Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Niclas G Karlsson‖Glyco Inflammatory Group, Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0002-3045-2628
Nicolle H Packer**Institute for Glycomics, Gold Coast Campus, Griffith University, Southport, QLD, Australia.
Frédérique LisacekFrom the ‡Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland; frederique.lisacek@sib.swiss.ORCID 0000-0002-0948-4537

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycomics@ExPASy (https://www.expasy.org/glycomics) is the glycomics tab of ExPASy, the server of SIB Swiss Institute of Bioinformatics. It was created in 2016 to centralize web-based glycoinformatics resources developed within an international network of glycoscientists. The hosted collection currently includes mainly databases and tools created and maintained at SIB but also links to a range of reference resources popular in the glycomics community. The philosophy of our toolbox is that it should be {glycoscientist AND protein scientist}-friendly with the aim of (1) popularizing the use of bioinformatics in glycobiology and (2) emphasizing the relationship between glycobiology and protein-oriented bioinformatics resources. The scarcity of data bridging these two disciplines led us to design tools as interactive as possible based on database connectivity to facilitate data exploration and support hypothesis building. Glycomics@ExPASy was designed, and is developed, with a long-term vision in close collaboration with glycoscientists to meet as closely as possible the growing needs of the community for glycoinformatics.

Indexed as

SoftwareData CollectionGlycomicsGlycoproteinsHumansMass SpectrometryPolysaccharidesProtein Interaction MapsGlycoproteinsPolysaccharidesBioinformaticsBioinformatics softwareGlycomicsGlycoproteomicsGlycosylation

Identifiers

PMID30097532
PMCPMC6210229

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.