Evidence map›Paper›PMID 30097514›Full record

ArticleThe Journal of cell biology2018

Reconstitution reveals Ykt6 as the autophagosomal SNARE in autophagosome-vacuole fusion.

Levent Bas, Daniel Papinski, Mariya Licheva, Raffaela Torggler, Sabrina Rohringer, Martina Schuschnig, Claudine Kraft

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 1 synthesis or guideline pooled it, 114 citations in OpenAlex.

  1. Guideline
  2. The ATG14: multi-layer autophagy control and an emerging therapeutic target in cancer.Apoptosis : an international journal on programmed cell death · 2026
    Review
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  19. Article
  20. Autophagy genes in biology and disease.Nature reviews. Genetics · 2023
    Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Levent BasMax F. Perutz Laboratories, Vienna Biocenter, University of Vienna, Vienna, Austria.ORCID 0000-0002-9007-012X
Daniel PapinskiMax F. Perutz Laboratories, Vienna Biocenter, University of Vienna, Vienna, Austria.
Mariya LichevaInstitute of Biochemistry and Molecular Biology, Centre for Biochemistry and Molecular Cell Research , Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Raffaela TorgglerMax F. Perutz Laboratories, Vienna Biocenter, University of Vienna, Vienna, Austria.
Sabrina RohringerMax F. Perutz Laboratories, Vienna Biocenter, University of Vienna, Vienna, Austria.
Martina SchuschnigMax F. Perutz Laboratories, Vienna Biocenter, University of Vienna, Vienna, Austria.
Claudine KraftMax F. Perutz Laboratories, Vienna Biocenter, University of Vienna, Vienna, Austria claudine.kraft@biochemie.uni-freiburg.de.ORCID 0000-0002-3324-4701
University of Vienna · ATUniversity of Freiburg · DE

Funding

Austrian Science Fund FWF P 25522Austrian Science Fund FWF P 28113European Research Council 769065HSRD VA HIR 10-001
6 · The paper itself

Abstract

Autophagy mediates the bulk degradation of cytoplasmic material, particularly during starvation. Upon the induction of autophagy, autophagosomes form a sealed membrane around cargo, fuse with a lytic compartment, and release the cargo for degradation. The mechanism of autophagosome-vacuole fusion is poorly understood, although factors that mediate other cellular fusion events have been implicated. In this study, we developed an in vitro reconstitution assay that enables systematic discovery and dissection of the players involved in autophagosome-vacuole fusion. We found that this process requires the Atg14-Vps34 complex to generate PI3P and thus recruit the Ypt7 module to autophagosomes. The HOPS-tethering complex, recruited by Ypt7, is required to prepare SNARE proteins for fusion. Furthermore, we discovered that fusion requires the R-SNARE Ykt6 on the autophagosome, together with the Q-SNAREs Vam3, Vam7, and Vti1 on the vacuole. These findings shed new light on the mechanism of autophagosome-vacuole fusion and reveal that the R-SNARE Ykt6 is required for this process.

Indexed as

Membrane FusionAutophagosomesClass III Phosphatidylinositol 3-KinasesQa-SNARE ProteinsQb-SNARE Proteinsrab GTP-Binding ProteinsR-SNARE ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynaptosomal-Associated Protein 25VacuolesClass III Phosphatidylinositol 3-KinasesQa-SNARE ProteinsQb-SNARE Proteinsrab GTP-Binding ProteinsR-SNARE ProteinsSaccharomyces cerevisiae ProteinsSynaptosomal-Associated Protein 25VAM3 protein, S cerevisiaeVAM7 protein, S cerevisiaeVTI1 protein, S cerevisiaeYKT6 protein, S cerevisiaeYPT7 protein, S cerevisiae

Identifiers

PMID30097514
PMCPMC6168255
OpenAlexW2887964568

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.