Evidence map›Paper›PMID 30097096›Full record

ArticleMethods in enzymology2018

Mechanistic Studies of Radical SAM Enzymes: Pyruvate Formate-Lyase Activating Enzyme and Lysine 2,3-Aminomutase Case Studies.

Amanda S Byer, Elizabeth C McDaniel, Stella Impano, William E Broderick, Joan B Broderick

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

  1. In vitro maturation of fully active [FeFe]-hydrogenase in a defined system including the iron carrier NfuA.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Nitric Oxide Inhibition of Glycyl Radical Enzymes and Their Activases.Journal of the American Chemical Society · 2025
    Article
  3. Anaerobic benzene oxidation inApplied and environmental microbiology · 2024
    Article
  4. Article
  5. Article
  6. Article
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  8. The Mechanism of Inhibition of Pyruvate Formate Lyase by Methacrylate.Journal of the American Chemical Society · 2023
    Article
  9. Journal of the American Chemical Society · 2022
    Article
  10. The BJournal of inorganic biochemistry · 2022
    Article
  11. HydG, the "dangler" iron, and catalytic production of free CO and CNDalton transactions (Cambridge, England : 2003) · 2021
    Article
  12. Article
  13. Angewandte Chemie (International ed. in English) · 2021
    Article
  14. Article
  15. Article
  16. Article
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  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Amanda S ByerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Elizabeth C McDanielDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Stella ImpanoDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
William E BroderickDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Joan B BroderickDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States. Electronic address: jbroderick@chemistry.montana.edu.
Montana State University · US

Funding

Iron-Sulfur Clusters in Biological Radical GenerationR01GM054608 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI BRODERICK, JOAN B · 2001 to 2018
$4.7M
NIGMS NIH HHS R01 GM054608
6 · The paper itself

Abstract

The radical SAM enzyme superfamily is large and diverse, with ever-increasing numbers of examples of characterized reactions. This chapter focuses on the methodology we have developed over the last 25 years for working with these enzymes, with the specific examples discussed being the pyruvate formate-lyase activating enzyme (PFL-AE) and lysine 2,3-aminomutase (LAM). Both enzymes are purified from overexpressing Escherichia coli, but differ in that PFL-AE is expressed without an affinity tag and does not require iron-sulfur cluster reconstitution, while LAM purification is carried out through use of a His

Indexed as

AcetyltransferasesEnzyme AssaysEnzymesEscherichia coli ProteinsIntramolecular TransferasesMethionine AdenosyltransferaseOxidation-ReductionRecombinant ProteinsS-AdenosylmethionineAcetyltransferasesEnzymesEscherichia coli ProteinsIntramolecular Transferaseslysine 2,3-aminomutaseMethionine AdenosyltransferaseMetK protein, E colipyruvate formate-lyase activating enzymeRecombinant ProteinsS-AdenosylmethionineGlycyl radical enzymeLysine 2,3-aminomutasePurificationPyruvate formate-lyaseRadical SAMReconstitutionS-adenosylmethionine

Identifiers

PMID30097096
PMCPMC8956242
OpenAlexW2872986276

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.