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ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2018

Strain variation and antigenic divergence among Bordetella pertussis circulating strains isolated from patients in Iran.

Fatemah Sadeghpour Heravi, Vajihe Sadat Nikbin, Masomeh Nakhost Lotfi, Pouran Badiri, Nazanin Jannesar Ahmadi, Seyed Mohsen Zahraei, Fereshteh Shahcheraghi

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Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Fha DeficientIranian journal of public health · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Genomic epidemiology of IranianEmerging microbes & infections · 2019
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fatemah Sadeghpour HeraviPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Vajihe Sadat NikbinPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Masomeh Nakhost LotfiPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Pouran BadiriPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Nazanin Jannesar AhmadiPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Seyed Mohsen ZahraeiPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Fereshteh ShahcheraghiPertussis Reference Laboratory' Department of Bacteriology, Pasteur Institute of Iran, Tehran, Iran. shahcheraghifereshteh@yahoo.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite global efforts and widespread vaccination to control whooping cough (pertussis) caused by B. pertussis, the re-emergence of pertussis still is being reported all over the world. Antigenic divergence in B. pertussis virulence factors is one of the reasons of pertussis resurgence, resulting in dissimilarity of local and vaccine strains. In this study, clonal spread and variation of B. pertussis virulence factor in isolated strains from Iranian patients have been analyzed. A total of 100 B. pertussis isolates were obtained from Pertussis Reference Laboratory of Pasteur Institute of Iran. Real-time PCR were performed to confirm the B. pertussis strains. The genomic patterns of B. pertussis strains were analyzed by pulsed-field gel electrophoresis (PFGE). Predominant alleles of local strains were ptxP3, ptxA1, prn2, fim 2-1, fim3-2, and cya2. PFGE results showed 25 patterns clustered into 18 PFGE groups. A few similarities between the circulating isolates, vaccine, and standard strains were obtained. Significantly, 48% of the isolates showed dominant pattern with different allelic profiles from vaccine strains. According to the genomic profiles, the clonal spread was observed among the circulating strains. Predominant virulence factor profile was also comparable with other countries. It may be suggested that strain variation between vaccine and local strains may have an effect on pertussis resurgence in Iran like other parts of the world.

Indexed as

AdolescentBacterial ProteinsBordetella pertussisChildChild, PreschoolElectrophoresis, Gel, Pulsed-FieldHumansInfantInfant, NewbornIranWhooping CoughYoung AdultBacterial ProteinsBordetella pertussisPulsed-field gel electrophoresis (PFGE)ResurgenceVaccineVirulence factors

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.