Evidence map›Paper›PMID 30093900›Full record

ArticleFrontiers in immunology2018

Quantitative Measurement of Naïve T Cell Association With Dendritic Cells, FRCs, and Blood Vessels in Lymph Nodes.

Humayra Tasnim, G Matthew Fricke, Janie R Byrum, Justyna O Sotiris, Judy L Cannon, Melanie E Moses

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

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  19. Human Lung-Resident Macrophages Colocalize with and Provide Costimulation to PD1American journal of respiratory and critical care medicine · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Humayra TasnimMoses Biological Computation Laboratory, Department of Computer Science, The University of New Mexico, Albuquerque, NM, United States.
G Matthew FrickeMoses Biological Computation Laboratory, Department of Computer Science, The University of New Mexico, Albuquerque, NM, United States.
Janie R ByrumThe Cannon Laboratory, Molecular Genetics & Microbiology, The University of New Mexico, Albuquerque, NM, United States.
Justyna O SotirisMoses Biological Computation Laboratory, Department of Computer Science, The University of New Mexico, Albuquerque, NM, United States.
Judy L CannonThe Cannon Laboratory, Molecular Genetics & Microbiology, The University of New Mexico, Albuquerque, NM, United States.
Melanie E MosesMoses Biological Computation Laboratory, Department of Computer Science, The University of New Mexico, Albuquerque, NM, United States.
University of New Mexico · US

Funding

WOMEN'S CANCERS RESEARCH PROGRAMP30CA118100 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Yolanda Sanchez · 2005 to 2026
$57.1M
UNM TRAININGP50GM085273 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI EDWARDS, JEREMY S · 2009 to 2018
$26.1M
Unfolded Protein Response and Autophagy in T Helper Cell Effector FunctionP20GM121176 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Samuel Joseph Endicott · 2017 to 2026
$24.9M
UNM Initiative to Maximize Student Diversity (IMSD)R25GM060201 · NIGMS · UNIVERSITY OF NEW MEXICO · PI WERNER-WASHBURNE, MARGRET C. · 2000 to 2017
$9.9M
Pilot Project ProgramP30GM110907 · NIGMS · UNIVERSITY OF NEW MEXICO · PI CUNNINGHAM, CHARLES · 2014 to 2018
$5.4M
Biology of Infectious Diseases &InflammationT32AI007538 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Michelle A Ozbun · 1998 to 2026
$5.2M
Integrative Program in CNS Pathophysiology ResearchP30GM103400 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI LIU, KE JIAN · 2012 to 2016
$4.7M
COBRE Center for Evolutionary and Theoretical ImmunologyP20GM103452 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2012 to 2013
$4.2M
The role of PKCtheta in T cell and T-ALL migrationR01AI097202 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI CANNON, JUDY LIN · 2012 to 2016
$1.9M
NCI NIH HHS P30 CA118100NIAID NIH HHS R01 AI097202NIAID NIH HHS T32 AI007538NIGMS NIH HHS P20 GM103452NIGMS NIH HHS P20 GM121176NIGMS NIH HHS P30 GM103400NIGMS NIH HHS P30 GM110907NIGMS NIH HHS P50 GM085273NIGMS NIH HHS R25 GM060201
6 · The paper itself

Abstract

T cells play a vital role in eliminating pathogenic infections. To activate, naïve T cells search lymph nodes (LNs) for dendritic cells (DCs). Positioning and movement of T cells in LNs is influenced by chemokines including CCL21 as well as multiple cell types and structures in the LNs. Previous studies have suggested that T cell positioning facilitates DC colocalization leading to T:DC interaction. Despite the influence chemical signals, cells, and structures can have on naïve T cell positioning, relatively few studies have used quantitative measures to directly compare T cell interactions with key cell types. Here, we use Pearson correlation coefficient (PCC) and normalized mutual information (NMI) to quantify the extent to which naïve T cells spatially associate with DCs, fibroblastic reticular cells (FRCs), and blood vessels in LNs. We measure spatial associations in physiologically relevant regions. We find that T cells are more spatially associated with FRCs than with their ultimate targets, DCs. We also investigated the role of a key motility chemokine receptor, CCR7, on T cell colocalization with DCs. We find that CCR7 deficiency does not decrease naïve T cell association with DCs, in fact, CCR7

Indexed as

AnimalsCell CommunicationChemokine CCL21CytokinesData Interpretation, StatisticalDendritic CellsFibroblastsHumansLymph NodesLymphocyte ActivationMiceModels, AnimalReceptors, CCR7T-LymphocytesCCL21 protein, humanChemokine CCL21CytokinesReceptors, CCR7CCR7dendritic cellsFRCslymph nodesmutual informationT cells

Identifiers

PMID30093900
PMCPMC6070610
OpenAlexW2817352403

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.