Evidence map›Paper›PMID 30093651›Full record

ArticleScientific reports2018

Genome wide identification and experimental validation of Pseudomonas aeruginosa Tat substrates.

Maxime Rémi Gimenez, Govind Chandra, Perrine Van Overvelt, Romé Voulhoux, Sophie Bleves, Bérengère Ize

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. InvasiveMicrobiology (Reading, England) · 2025
    Article
  3. TheMicrobiology (Reading, England) · 2025
    Article
  4. Article
  5. ThebioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Cell Envelope Stress Response in Pseudomonas aeruginosa.Advances in experimental medicine and biology · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Maxime Rémi GimenezLaboratoire d'Ingénierie des Systèmes Macromoléculaires (LISM-UMR7255), Institut de Microbiologie de la Méditerranée, CNRS and Aix-Marseille Univ., 31 Chemin Joseph Aiguier, CS 70071, 13402 Marseille cedex 09, France.
Govind ChandraDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Perrine Van OverveltLaboratoire d'Ingénierie des Systèmes Macromoléculaires (LISM-UMR7255), Institut de Microbiologie de la Méditerranée, CNRS and Aix-Marseille Univ., 31 Chemin Joseph Aiguier, CS 70071, 13402 Marseille cedex 09, France.
Romé VoulhouxLaboratoire d'Ingénierie des Systèmes Macromoléculaires (LISM-UMR7255), Institut de Microbiologie de la Méditerranée, CNRS and Aix-Marseille Univ., 31 Chemin Joseph Aiguier, CS 70071, 13402 Marseille cedex 09, France.ORCID 0000-0002-5258-5958
Sophie BlevesLaboratoire d'Ingénierie des Systèmes Macromoléculaires (LISM-UMR7255), Institut de Microbiologie de la Méditerranée, CNRS and Aix-Marseille Univ., 31 Chemin Joseph Aiguier, CS 70071, 13402 Marseille cedex 09, France.
Bérengère IzeLaboratoire d'Ingénierie des Systèmes Macromoléculaires (LISM-UMR7255), Institut de Microbiologie de la Méditerranée, CNRS and Aix-Marseille Univ., 31 Chemin Joseph Aiguier, CS 70071, 13402 Marseille cedex 09, France. bize@imm.cnrs.fr.ORCID 0000-0001-9106-9254
Centre National de la Recherche Scientifique · FRJohn Innes Centre · GB

Funding

Association Vaincre la Mucoviscidose (Vaincre la Mucoviscidos) RF20140501138
6 · The paper itself

Abstract

In bacteria, the twin-arginine translocation (Tat) pathway allows the export of folded proteins through the inner membrane. Proteins targeted to this system are synthesized with N-terminal signal peptides bearing a conserved twin-arginine motif. The Tat pathway is critical for many bacterial processes including pathogenesis and virulence. However, the full set of Tat substrates is unknown in many bacteria, and the reliability of in silico prediction methods largely uncertain. In this work, we performed a combination of in silico analysis and experimental validation to identify a core set of Tat substrates in the opportunistic pathogen Pseudomonas aeruginosa. In silico analysis predicted 44 putative Tat signal peptides in the P. aeruginosa PA14 proteome. We developed an improved amidase-based Tat reporter assay to show that 33 of these are real Tat signal peptides. In addition, in silico analysis of the full translated genome revealed a Tat candidate with a missassigned start codon. We showed that it is a new periplasmic protein in P. aeruginosa. Altogether we discovered and validated 34 Tat substrates. These show little overlap with Escherichia coli Tat substrates, and functional analysis points to a general role for the P. aeruginosa Tat system in the colonization of environmental niches and pathogenicity.

Indexed as

Genome, BacterialAmidohydrolasesAmino Acid SequenceBacterial ProteinsBase SequenceEscherichia coli ProteinsGenome-Wide Association StudyMembrane Transport ProteinsProtein Sorting SignalsProtein TransportProteomeProteomicsPseudomonas aeruginosaSubstrate SpecificityTwin-Arginine-Translocation SystemamidaseAmidohydrolasesBacterial ProteinsEscherichia coli ProteinsMembrane Transport ProteinsProtein Sorting SignalsProteometwin-arginine translocase complex, E coliTwin-Arginine-Translocation System

Identifiers

PMID30093651
PMCPMC6085387
OpenAlexW2886095627

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.