Evidence map›Paper›PMID 30093639›Full record

ArticleNature communications2018

Genome-wide association study identifies multiple new loci associated with Ewing sarcoma susceptibility.

Mitchell J Machiela, Thomas G P Grünewald, Didier Surdez, Stephanie Reynaud, Olivier Mirabeau, Eric Karlins, Rebeca Alba Rubio, Sakina Zaidi, Sandrine Grossetete-Lalami, Stelly Ballet and 43 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Germline Variation and Somatic Alterations in Ewing Sarcoma.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
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  13. Contribution ofmedRxiv : the preprint server for health sciences · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Birth characteristics and risk of Ewing sarcoma.Cancer causes & control : CCC · 2023
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

53 authors at 20 institutions in 6 countries.

Mitchell J MachielaDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0001-6538-9705
Thomas G P GrünewaldMax-Eder Research Group for Pediatric Sarcoma Biology, Institute of Pathology, Faculty of Medicine, LMU, 80337, Munich, Germany.ORCID http://orcid.org/0000-0003-0920-7377
Didier SurdezInserm U830, Équipe Labellisés LNCC, PSL Université, Institut Curie, 75005, Paris, France.ORCID http://orcid.org/0000-0002-7118-7859
Stephanie ReynaudSIREDO Oncology Centre, Institut Curie, 75005, Paris, France.
Olivier MirabeauInserm U830, Équipe Labellisés LNCC, PSL Université, Institut Curie, 75005, Paris, France.
Eric KarlinsDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Rebeca Alba RubioMax-Eder Research Group for Pediatric Sarcoma Biology, Institute of Pathology, Faculty of Medicine, LMU, 80337, Munich, Germany.
Sakina ZaidiInserm U830, Équipe Labellisés LNCC, PSL Université, Institut Curie, 75005, Paris, France.
Sandrine Grossetete-LalamiInserm U830, Équipe Labellisés LNCC, PSL Université, Institut Curie, 75005, Paris, France.
Stelly BalletSIREDO Oncology Centre, Institut Curie, 75005, Paris, France.
Eve LapoubleSIREDO Oncology Centre, Institut Curie, 75005, Paris, France.
Valérie LaurenceSIREDO Oncology Centre, Institut Curie, 75005, Paris, France.
Jean MichonSIREDO Oncology Centre, Institut Curie, 75005, Paris, France.
Gaelle PierronSIREDO Oncology Centre, Institut Curie, 75005, Paris, France.ORCID http://orcid.org/0000-0002-2536-7680
Heinrich KovarChildren's Cancer Research Institute, St. Anna Kinderkrebsforschung, 1090, Vienna, Austria.ORCID http://orcid.org/0000-0001-6873-9109
Nathalie GasparDepartment of Oncology for Child and Adolescent, Institut Gustave Roussy, 94800, Villejuif, France.
Udo KontnyDivision of Pediatric Hematology Oncology and Stem Cell Transplantation, Medical Faculty, RWTH Aachen University, 52062, Aachen, Germany.
Anna González-NeiraHuman Genotyping Unit-CeGen, Human Cancer Genetics Programme, Spanish National Cancer Research Centre, 28029, Madrid, Spain.
Piero PicciLaboratorio di Oncologia Sperimentale, Istituto Ortopedico Rizzoli di Bologna, 40136, Bologna, Italy.
Javier AlonsoUnidad de Tumores Sólidos Infantiles, Instituto de Investigación de Enfermedades Raras, Instituto de Salud Carlos III, 28220, Majadahonda, Spain.ORCID http://orcid.org/0000-0002-6287-8391
Ana Patino-GarciaLaboratory of Pediatrics, University of Navarra, University Clinic of Navarra, IdiSNA, 31008, Pamplona, Spain.
Nadège CorradiniInstitute for Paediatric Haematology and Oncology, Leon Bérard Cancer Centre, University of Lyon, 69008, Lyon, France.
Perrine Marec BérardInstitute for Paediatric Haematology and Oncology, Leon Bérard Cancer Centre, University of Lyon, 69008, Lyon, France.
Neal D FreedmanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Nathaniel RothmanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Casey L DagnallDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0001-7334-4718
Laurie BurdettDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Kristine JonesDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Michelle ManningDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Kathleen WyattDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Weiyin ZhouDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Meredith YeagerDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
David G CoxCentre Léon Bérard, INSERM U1052, 69008, Lyon, France.
Robert N HooverDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Javed KhanGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20892, USA.
Gregory T ArmstrongDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Wendy M LeisenringCancer Prevention and Clinical Statistics Programs, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.
Smita BhatiaInstitute for Cancer Outcomes and Survivorship, University of Alabama, Birmingham, AL, 35294, USA.
Leslie L RobisonDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Andreas E KulozikUniversity Children's Hospital of Heidelberg, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-1953-0848
Jennifer KriebelResearch Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764, Neuherberg, Germany.ORCID http://orcid.org/0000-0003-4270-018X
Thomas MeitingerInstitute of Human Genetics, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764, Neuherberg, Germany.
Markus MetzlerUniversity Children's Hospital of Erlangen, 91054, Erlangen, Germany.
Wolfgang HartmannGerhard-Domagk Institute of Pathology, University Hospital of Münster, 48149, Münster, Germany.
Konstantin StrauchInstitute of Genetic Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764, Neuherberg, Germany.
Thomas KirchnerGerman Consortium for Cancer Research (DKTK), 69120, Heidelberg, Germany.
Uta DirksenUniversity Children's Hospital of Essen, 45147, Essen, Germany.
Lindsay M MortonDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Lisa MirabelloDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Margaret A TuckerDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Franck TirodeInserm U830, Équipe Labellisés LNCC, PSL Université, Institut Curie, 75005, Paris, France.
Stephen J ChanockDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA. chanocks@mail.nih.gov.
Olivier DelattreInserm U830, Équipe Labellisés LNCC, PSL Université, Institut Curie, 75005, Paris, France. olivier.delattre@curie.fr.
National Cancer Institute · USLeidos (United States) · USInserm · FRInstitut Curie · FRHelmholtz Zentrum München · DEGerman Cancer Research Center · DESt. Jude Children's Research Hospital · USUniversité Claude Bernard Lyon 1 · FRClinica Universidad de Navarra · ESEssen University Hospital · DEFred Hutch Cancer Center · USHeidelberg University · DEInstitut Gustave Roussy · FRInstituto de Salud Carlos III · ESIstituto Ortopedico Rizzoli · ITLudwig-Maximilians-Universität München · DERWTH Aachen University · DESpanish National Cancer Research Centre · ESSt Anna Children's Hospital · ATUniversitätsklinikum Erlangen · DE

Funding

Mach-LETSGO: Machine-LEarning of Treatment, Survey, and Genetics towards Obtaining Correct Classification of Chronic Conditions in Adult Survivors in the Childhood Cancer Survivor Study - CCSS SupplU24CA055727 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Gregory Armstrong · 1999 to 2026
$96.7M
BIOINFORMATICS: SYSTEMS BIOLOGY OF PEDIATRIC CANCERSZIABC011002 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KHAN, JAVED · 2009 to 2025
$9.3M
NCI NIH HHS U24 CA055727U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) Intramural Research Program
6 · The paper itself

Abstract

Ewing sarcoma (EWS) is a pediatric cancer characterized by the EWSR1-FLI1 fusion. We performed a genome-wide association study of 733 EWS cases and 1346 unaffected individuals of European ancestry. Our study replicates previously reported susceptibility loci at 1p36.22, 10q21.3 and 15q15.1, and identifies new loci at 6p25.1, 20p11.22 and 20p11.23. Effect estimates exhibit odds ratios in excess of 1.7, which is high for cancer GWAS, and striking in light of the rarity of EWS cases in familial cancer syndromes. Expression quantitative trait locus (eQTL) analyses identify candidate genes at 6p25.1 (RREB1) and 20p11.23 (KIZ). The 20p11.22 locus is near NKX2-2, a highly overexpressed gene in EWS. Interestingly, most loci reside near GGAA repeat sequences and may disrupt binding of the EWSR1-FLI1 fusion protein. The high locus to case discovery ratio from 733 EWS cases suggests a genetic architecture in which moderate risk SNPs constitute a significant fraction of risk.

Indexed as

Gene Expression ProfilingGenetic Predisposition to DiseaseGenome-Wide Association StudyAllelesCell Cycle ProteinsCell ProliferationDNA-Binding ProteinsGene Expression Regulation, NeoplasticGenotypeHomeobox Protein Nkx-2.2Homeodomain ProteinsHumansNuclear ProteinsOncogene Proteins, FusionPolymorphism, Single NucleotideProto-Oncogene Protein c-fli-1Cell Cycle ProteinsDNA-Binding ProteinsEWS-FLI fusion proteinHomeobox Protein Nkx-2.2Homeodomain ProteinsKIZ protein, humannkx2.2b protein, zebrafishNKX2-2 protein, humanNuclear ProteinsOncogene Proteins, FusionProto-Oncogene Protein c-fli-1RNA-Binding Protein EWSRREB1 protein, humanTranscription FactorsZebrafish Proteins

Identifiers

PMID30093639
PMCPMC6085378
OpenAlexW2887872442

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.