Evidence map›Paper›PMID 30093597›Full record

ArticleScience (New York, N.Y.)2018

Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors.

Matthew D Young, Thomas J Mitchell, Felipe A Vieira Braga, Maxine G B Tran, Benjamin J Stewart, John R Ferdinand, Grace Collord, Rachel A Botting, Dorin-Mirel Popescu, Kevin W Loudon and 28 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 481 papers.

0numbers the graph read from it
0cells of the map it votes in
481citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

481 citing papers in PubMed.

  1. Article
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  5. Urinary tract infections in children.Nature reviews. Urology · 2026
    Review
  6. Article
  7. scLGGCL: Label-Guided Graph Contrastive Learning for Single-Cell Fusion Clustering.Interdisciplinary sciences, computational life sciences · 2026
    Article
  8. Article
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421 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Matthew D YoungWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0003-0937-5290
Thomas J MitchellWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0003-0761-9503
Felipe A Vieira BragaWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0003-0206-9258
Maxine G B TranUCL Division of Surgery and Interventional Science, Royal Free Hospital, London NW3 2PS, UK.ORCID 0000-0002-6034-4433
Benjamin J StewartMolecular Immunity Unit, Department of Medicine, University of Cambridge, MRC Laboratory of Molecular Biology, Cambridge CB2 0QQ, UK.ORCID 0000-0003-4522-0085
John R FerdinandMolecular Immunity Unit, Department of Medicine, University of Cambridge, MRC Laboratory of Molecular Biology, Cambridge CB2 0QQ, UK.ORCID 0000-0003-0936-0128
Grace CollordWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0003-1924-4411
Rachel A BottingInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Dorin-Mirel PopescuInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Kevin W LoudonMolecular Immunity Unit, Department of Medicine, University of Cambridge, MRC Laboratory of Molecular Biology, Cambridge CB2 0QQ, UK.
Roser Vento-TormoWellcome Sanger Institute, Hinxton CB10 1SA, UK.
Emily StephensonInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.ORCID 0000-0002-4244-4019
Alex CaganWellcome Sanger Institute, Hinxton CB10 1SA, UK.
Sarah J FarndonWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0001-6024-4267
Martin Del Castillo Velasco-HerreraWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0001-5956-0211
Charlotte GuzzoWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0003-3742-5961
Nathan RichozMolecular Immunity Unit, Department of Medicine, University of Cambridge, MRC Laboratory of Molecular Biology, Cambridge CB2 0QQ, UK.
Lira MamanovaWellcome Sanger Institute, Hinxton CB10 1SA, UK.ORCID 0000-0003-1463-8622
Tevita AhoCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.
James N ArmitageDepartment of Surgery, University of Cambridge, Cambridge CB2 0QQ, UK.
Antony C P RiddickDepartment of Surgery, University of Cambridge, Cambridge CB2 0QQ, UK.
Imran MushtaqGreat Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
Stephen FarrellCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.
Dyanne RamplingGreat Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
James NicholsonCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.
Andrew FilbyInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Johanna BurgeCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.
Steven LisgoHuman Developmental Biology Resource, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.ORCID 0000-0001-5186-3971
Patrick H MaxwellCambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
Susan LindsayHuman Developmental Biology Resource, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.ORCID 0000-0003-2980-4582
Anne Y WarrenCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.ORCID 0000-0002-1170-7867
Grant D StewartCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.ORCID 0000-0003-3188-9140
Neil SebireGreat Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
Nicholas ColemanCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.
Muzlifah HaniffaInstitute of Cellular Medicine, Newcastle University, Newcastle upon Tyne NE2 4HH, UK. sb31@sanger.ac.uk mrc38@medschl.cam.ac.uk st9@sanger.ac.uk m.a.haniffa@newcastle.ac.uk.ORCID 0000-0002-3927-2084
Sarah A TeichmannWellcome Sanger Institute, Hinxton CB10 1SA, UK. sb31@sanger.ac.uk mrc38@medschl.cam.ac.uk st9@sanger.ac.uk m.a.haniffa@newcastle.ac.uk.ORCID 0000-0002-6294-6366
Menna ClatworthyCambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK. sb31@sanger.ac.uk mrc38@medschl.cam.ac.uk st9@sanger.ac.uk m.a.haniffa@newcastle.ac.uk.ORCID 0000-0002-3340-9828
Sam BehjatiWellcome Sanger Institute, Hinxton CB10 1SA, UK. sb31@sanger.ac.uk mrc38@medschl.cam.ac.uk st9@sanger.ac.uk m.a.haniffa@newcastle.ac.uk.ORCID 0000-0002-6600-7665

Funding

Medical Research Council G0700089Medical Research Council MR/K023934/1Medical Research Council MR/M008975/1Medical Research Council MR/N024907/1Versus Arthritis 21777Wellcome Trust 206194
6 · The paper itself

Abstract

Messenger RNA encodes cellular function and phenotype. In the context of human cancer, it defines the identities of malignant cells and the diversity of tumor tissue. We studied 72,501 single-cell transcriptomes of human renal tumors and normal tissue from fetal, pediatric, and adult kidneys. We matched childhood Wilms tumor with specific fetal cell types, thus providing evidence for the hypothesis that Wilms tumor cells are aberrant fetal cells. In adult renal cell carcinoma, we identified a canonical cancer transcriptome that matched a little-known subtype of proximal convoluted tubular cell. Analyses of the tumor composition defined cancer-associated normal cells and delineated a complex vascular endothelial growth factor (VEGF) signaling circuit. Our findings reveal the precise cellular identities and compositions of human kidney tumors.

Indexed as

TranscriptomeAdultCarcinoma, Renal CellChildGenetic VariationHumansKidneyKidney NeoplasmsSingle-Cell AnalysisWilms Tumor

Identifiers

PMID30093597
PMCPMC6104812

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.