Evidence map›Paper›PMID 30092808›Full record

ArticleBMC biotechnology2018

Acetosyringone treatment duration affects large T-DNA molecule transfer to rice callus.

Jing Xi, Minesh Patel, Shujie Dong, Qiudeng Que, Rongda Qu

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  6. Review
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  10. Evaluation of Parameters AffectingPlants (Basel, Switzerland) · 2024
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  11. Article
  12. Review
  13. Article
  14. Optimizing Transformation Frequency ofJournal of fungi (Basel, Switzerland) · 2021
    Review
  15. Article
  16. Article
  17. A simple and fastPlant methods · 2020
    Article
  18. Article
  19. Biodesign research · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jing XiDepartment of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA.
Minesh PatelDepartment of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA.
Shujie DongSyngenta Crop Protection, LLC, 9 Davis Drive, Research Triangle Park, Durham, NC, 27709, USA.
Qiudeng QueSyngenta Crop Protection, LLC, 9 Davis Drive, Research Triangle Park, Durham, NC, 27709, USA.
Rongda QuDepartment of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA. rqu@ncsu.edu.ORCID 0000-0002-2783-9872
North Carolina State University · USTriangle · USUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLarge T-DNA fragment transfer has long been a problem for Agrobacterium-mediated transformation. Although vector systems, such as the BIBAC series, were successfully developed for the purpose, low transformation efficiencies were consistently observed.

resultsTo gain insights of this problem in monocot transformation, we investigated the T-strand accumulation of various size of T-DNA in two kinds of binary vectors (one copy vs. multi-copy) upon acetosyringone (AS) induction and explored ways to improve the efficiency of the large T-DNA fragment transfer in Agrobacterium-mediated rice transformation. By performing immuno-precipitation of VirD2-T-strands and quantitative real-time PCR assays, we monitored the accumulation of the T-strands in Agrobacterium tumeficiens after AS induction. We further demonstrated that extension of AS induction time highly significantly improved large-size T-DNA transfer to rice cells.

conclusionsOur data provide valuable information of the T-strand dynamics and its impact on large T-DNA transfer in monocots, and likely dicots as well.

Indexed as

AcetophenonesAgrobacterium tumefaciensChromosomes, Artificial, BacterialDNA, BacterialOryzaPlants, Genetically ModifiedTransformation, GeneticAcetophenonesacetosyringoneDNA, BacterialT-DNAAgrobacteriumBIBACImmuno-precipitationLarge T-DNAMonocot transformation

Identifiers

PMID30092808
PMCPMC6085696
OpenAlexW2885364852

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.