Evidence map›Paper›PMID 30092229›Full record

ArticleArchives of biochemistry and biophysics2018

Exploring the entry route of palmitic acid and palmitoylcarnitine into myoglobin.

Sree V Chintapalli, Andriy Anishkin, Sean H Adams

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Metabolic physiology and skeletal muscle phenotypes in male and female myoglobin knockout mice.American journal of physiology. Endocrinology and metabolism · 2021
    Article
  11. Applications of water molecules for analysis of macromolecule properties.Computational and structural biotechnology journal · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Sree V ChintapalliArkansas Children's Nutrition Center -and- Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, USA. Electronic address: svchintapalli@uams.edu.
Andriy AnishkinDepartment of Biology, University of Maryland, College Park, USA.
Sean H AdamsArkansas Children's Nutrition Center -and- Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, USA.
Arkansas Children's Nutrition Center · USUniversity of Arkansas for Medical Sciences · USUniversity of Maryland, College Park · US

Funding

Understanding Hesitant AdoptersP20GM103429 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Lawrence E Cornett, JERRY WARE · 2012 to 2026
$60.9M
Identification of Muscle-Specific Biomarkers of Fatty Acid beta-OxidationR01DK078328 · NIDDK · U.S. AGRICULTURAL RESEARCH SERVICE · PI ADAMS, SEAN HARRISON · 2008 to 2012
$1.8M
The bacterial mechanosentitive channel as a multimodal sensor deviceR01GM107652 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI ANISHKIN, ANDRIY, SINTIM, HERMAN O · 2013 to 2016
$1.1M
NIDDK NIH HHS R01 DK078328NIGMS NIH HHS P20 GM103429NIGMS NIH HHS R01 GM107652
6 · The paper itself

Abstract

Myoglobin, besides its role in oxygen turnover, has gained recognition as a potential regulator of lipid metabolism. Previously, we confirmed the interaction of fatty acids and acylcarnitines with Oxy-Myoglobin, using both molecular dynamic simulations and Isothermal Titration Calorimetry studies. However, those studies were limited to testing only the binding sites derived from homology to fatty acid binding proteins and predictions using automated docking. To explore the entry mechanisms of the lipid ligands into myoglobin, we conducted molecular dynamic simulations of murine Oxy- and Deoxy-Mb structures with palmitate or palmitoylcarnitine starting at different positions near the protein surface. The simulations indicated that both ligands readily (under ∼10-20 ns) enter the Oxy-Mb structure through a dynamic area ("portal region") near heme, known to be the entry point for small molecule gaseous ligands like O

Indexed as

Amino Acid SequenceAnimalsBinding SitesFatty Acid-Binding ProteinsHemeHorsesLigandsMiceMolecular Dynamics SimulationMyoglobinOxygenPalmitic AcidPalmitoylcarnitineProtein BindingProtein ConformationSequence AlignmentdeoxymyoglobinFatty Acid-Binding ProteinsHemeLigandsMyoglobinOxygenPalmitic AcidPalmitoylcarnitineAcylcarnitinesFatty acidMyoglobin

Identifiers

PMID30092229
PMCPMC7413075
OpenAlexW2886512495

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.