Evidence map›Paper›PMID 30089728›Full record

ArticleJCI insight2018

Quantifying size and diversity of the human T cell alloresponse.

Susan DeWolf, Boris Grinshpun, Thomas Savage, Sai Ping Lau, Aleksandar Obradovic, Brittany Shonts, Suxiao Yang, Heather Morris, Julien Zuber, Robert Winchester and 2 more

Abstract read
In one paragraph

Article in JCI insight, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Immunogenomic landscape of the T cell repertoire after human lung transplantation and its clinical relevance.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Unraveling CD8American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2025
    Review
  11. Review
  12. Review
  13. Article
  14. Discrimination of Anti-Donor Response in Allogeneic Transplantation Using an Alloreactive T-Cell Detection Assay.Transplant international : official journal of the European Society for Organ Transplantation · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. T-cell receptor sequencing reveals selected donor-reactive CD8American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Susan DeWolfCenter for Translational Immunology, Department of Medicine.
Boris GrinshpunDepartment of Systems Biology.
Thomas SavageCenter for Translational Immunology, Department of Medicine.
Sai Ping LauCenter for Translational Immunology, Department of Medicine.
Aleksandar ObradovicCenter for Translational Immunology, Department of Medicine.
Brittany ShontsCenter for Translational Immunology, Department of Medicine.
Suxiao YangCenter for Translational Immunology, Department of Medicine.
Heather MorrisCenter for Translational Immunology, Department of Medicine.
Julien ZuberCenter for Translational Immunology, Department of Medicine.
Robert WinchesterDivision of Rheumatology, Department of Medicine, and.
Megan SykesCenter for Translational Immunology, Department of Medicine.
Yufeng ShenDepartment of Systems Biology and Biomedical Informatics, Columbia University Medical Center, New York, New York, USA.

Funding

Immune Tolerance Network UM1 2023 SupplementUM1AI109565 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI Mark S Anderson, Jane Hoyt Buckner · 2014 to 2026
$451.6M
Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Mice with autologous human T1D-derived immune systems and iPSC-derived beta cellsUC4DK104207 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SYKES, MEGAN · 2014 to 2014
$3.8M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
An RA immune system derived from patient's stem cellsR21AR064473 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WINCHESTER, ROBERT J · 2013 to 2014
$374k
NCRR NIH HHS S10 RR027050NIAID NIH HHS P01 AI106697NIAID NIH HHS UM1 AI109565NIAMS NIH HHS R21 AR064473NIDDK NIH HHS UC4 DK104207NIH HHS S10 OD020056
6 · The paper itself

Abstract

Alloreactive T lymphocytes are the primary mediators of immune responses in transplantation, both in the graft-versus-host and host-versus-graft directions. While essentially all clones comprising the human T cell repertoire have been selected on self-peptide presented by self-human leukocyte antigens (self-HLAs), much remains to be understood about the nature of clones capable of responding to allo-HLA molecules. Quantitative tools to study these cells are critical to understand fundamental features of this important response; however, the large size and diversity of the alloreactive T cell repertoire in humans presents a great technical challenge. We have developed a high-throughput T cell receptor (TCR) sequencing approach to characterize the human alloresponse. We present a statistical method to model T cell clonal frequency distribution and quantify repertoire diversity. Using these approaches, we measured the diversity and frequency of distinct alloreactive CD4+ and CD8+ T cell populations in HLA-mismatched responder-stimulator pairs. Our findings indicate that the alloimmune repertoire is highly specific for a given pair of individuals, that most alloreactive clones circulate at low frequencies, and that a high proportion of TCRs is likely able to recognize alloantigens.

Indexed as

AdultBone Marrow TransplantationComputer SimulationGraft vs Host DiseaseHealthy VolunteersHigh-Throughput Nucleotide SequencingHLA AntigensHumansImmunophenotypingIsoantigensKidney TransplantationModels, BiologicalReceptors, Antigen, T-CellT-LymphocytesTransplantation, HomologousHLA AntigensIsoantigensReceptors, Antigen, T-CellBioinformaticsImmunologyT-cell receptorT cellsTransplantation

Identifiers

PMID30089728
PMCPMC6129121

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.