Evidence map›Paper›PMID 30089702›Full record

ArticleJournal of virology2018

Selective 4-Thiouracil Labeling of RNA Transcripts within Latently Infected Cells after Infection with Human Cytomegalovirus Expressing Functional Uracil Phosphoribosyltransferase.

Kathryn L Roche, Masatoshi Nukui, Benjamin A Krishna, Christine M O'Connor, Eain A Murphy

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. N6-methyladenosine modification of HCMV IE1 transcript promotes the repressive state of viral genome to achieve latent infection.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  10. Human cytomegalovirus G protein-coupled receptor US28 promotes latency by attenuating c-fos.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Kathryn L RocheFORGE Life Science, Pennsylvania Biotechnology Center, Doylestown, Pennsylvania, USA.
Masatoshi NukuiDepartment of Translational Medicine, Baruch S. Blumberg Institute of Living Science, Institute for Hepatitis and Virus Research, Doylestown, Pennsylvania, USA.
Benjamin A KrishnaGenomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Christine M O'ConnorGenomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.ORCID https://orcid.org/0000-0003-4943-3774
Eain A MurphyFORGE Life Science, Pennsylvania Biotechnology Center, Doylestown, Pennsylvania, USA eain.murphy@bblumberg.org.
Cleveland Clinic Lerner College of Medicine · USDoylestown Hospital · USBaruch S. Blumberg Institute · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
Mechanisms of Human Cytomegalovirus LatencyR01AI101080 · NIAID · EVRYS BIO, LLC · PI MURPHY, EAIN A · 2013 to 2016
$1.6M
The Role of US28 During HCMV LatencyR21AI119415 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI O'CONNOR, CHRISTINE M · 2015 to 2016
$457k
NCI NIH HHS P30 CA043703NIAID NIH HHS R01 AI101080
6 · The paper itself

Abstract

Infections with human cytomegalovirus (HCMV) are highly prevalent in the general population as the virus has evolved the capacity to undergo distinct replication strategies resulting in lytic, persistent, and latent infections. During the latent life cycle, HCMV resides in subsets of cells within the hematopoietic cell compartment, including hematopoietic progenitor cells (HPCs) and peripheral blood monocytes. Since only a small fraction of these cell types harbor viral genomes during natural latency, identification and analysis of distinct changes mediated by viral infection are difficult to assess. In order to characterize latent infections of HPCs, we used an approach that involves complementation of deficiencies within the human pyrimidine salvage pathway, thus allowing for conversion of labeled uracil into rUTP. Here, we report the development of a recombinant HCMV that complements the defective human pyrimidine salvage pathway, allowing incorporation of thiol containing UTP into all RNA species that are synthesized within an infected cell. This virus grows to wild-type kinetics and can establish a latent infection within two distinct culture models of HCMV latency. Using this recombinant HCMV, we report the specific labeling of transcripts only within infected cells. These transcripts reveal a transcriptional landscape during HCMV latency that is distinct from uninfected cells. The utility of this labeling system allows for the identification of distinct changes within host transcripts and will shed light on characterizing how HCMV establishes and maintains latency.

Indexed as

Cells, CulturedCytomegalovirusCytomegalovirus InfectionsHumansPentosyltransferasesRNA, ViralStaining and LabelingThiouracilUracilVirus Latency4-thiouracilPentosyltransferasesRNA, ViralThiouracilUraciluracil phosphoribosyltransferasecytomegalovirusHCMVlatencytranscriptomeUPRT

Identifiers

PMID30089702
PMCPMC6189490
OpenAlexW2886286903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.