Evidence map›Paper›PMID 30089174›Full record

ArticlePloS one2018

Human pharyngeal microbiota in age-related macular degeneration.

Eliza Xin Pei Ho, Chui Ming Gemmy Cheung, Shuzhen Sim, Collins Wenhan Chu, Andreas Wilm, Clarabelle Bitong Lin, Ranjana Mathur, Doric Wong, Choi Mun Chan, Mayuri Bhagarva and 6 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03665961 (The Association Between Microbiota, Endotoxaemia and the Host Obesity/ Insulin Resistance), which is not on this map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03665961 completednot on this map

The Association Between Microbiota, Endotoxaemia and the Host Obesity/ Insulin Resistance (MiPOOP Study)

TypeobservationalSponsorChangi General HospitalRan2016 to 2017Enrolled35ConditionsCentral Obesity
3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Deleterious Effect of Air Pollution on Human Microbial Community and Bacterial Flora: A Short Review.International journal of environmental research and public health · 2022
    Review
  9. Review
  10. Gut Microbes and Eye Disease.Ophthalmic research · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. A pilot study to examine the association between human gut microbiota and the host's central obesity.JGH open : an open access journal of gastroenterology and hepatology · 2019
    Article
  17. The microbiome and ophthalmic disease.Experimental biology and medicine (Maywood, N.J.) · 2019
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Eliza Xin Pei HoGenome Institute of Singapore,Singapore, Singapore.ORCID 0000-0003-4534-9815
Chui Ming Gemmy CheungSingapore Eye Research Institute, Singapore National Eye Center, Duke-NUS Medical School, National University of Singapore, Singapore, Singapore.
Shuzhen SimGenome Institute of Singapore,Singapore, Singapore.
Collins Wenhan ChuGenome Institute of Singapore,Singapore, Singapore.
Andreas WilmGenome Institute of Singapore,Singapore, Singapore.
Clarabelle Bitong LinGenome Institute of Singapore,Singapore, Singapore.
Ranjana MathurSingapore Eye Research Institute, Singapore National Eye Center, Duke-NUS Medical School, National University of Singapore, Singapore, Singapore.
Doric WongSingapore Eye Research Institute, Singapore National Eye Center, Duke-NUS Medical School, National University of Singapore, Singapore, Singapore.
Choi Mun ChanSingapore Eye Research Institute, Singapore National Eye Center, Duke-NUS Medical School, National University of Singapore, Singapore, Singapore.
Mayuri BhagarvaDepartment of Ophthalmology, National University of Singapore and National University Health System, Singapore, Singapore.
Augustinus LaudeNational Healthcare Group Eye Institute, Tan Tock Seng Hospital, Singapore, Singapore.
Tock Han LimNational Healthcare Group Eye Institute, Tan Tock Seng Hospital, Singapore, Singapore.
Tien Yin WongSingapore Eye Research Institute, Singapore National Eye Center, Duke-NUS Medical School, National University of Singapore, Singapore, Singapore.
Ching Yu ChengSingapore Eye Research Institute, Singapore National Eye Center, Duke-NUS Medical School, National University of Singapore, Singapore, Singapore.
Sonia DavilaGenome Institute of Singapore,Singapore, Singapore.
Martin HibberdGenome Institute of Singapore,Singapore, Singapore.
National University of Singapore · SGGenome Institute of Singapore · SGTan Tock Seng Hospital · SGLondon School of Hygiene & Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhile the aetiology of age-related macular degeneration (AMD)-a major blinding disease-remains unknown, the disease is strongly associated with variants in the complement factor H (CFH) gene. CFH variants also confer susceptibility to invasive infection with several bacterial colonizers of the nasopharyngeal mucosa. This shared susceptibility locus implicates complement deregulation as a common disease mechanism, and suggests the possibility that microbial interactions with host complement may trigger AMD. In this study, we address this possibility by testing the hypothesis that AMD is associated with specific microbial colonization of the human nasopharynx.

resultsHigh-throughput Illumina sequencing of the V3-V6 region of the microbial 16S ribosomal RNA gene was used to comprehensively and accurately describe the human pharyngeal microbiome, at genus level, in 245 AMD patients and 386 controls. Based on mean and differential microbial abundance analyses, we determined an overview of the pharyngeal microbiota, as well as candidate genera (Prevotella and Gemella) suggesting an association towards AMD health and disease conditions.

conclusionsUtilizing an extensive study population from Singapore, our results provided an accurate description of the pharyngeal microbiota profiles in AMD health and disease conditions. Through identification of candidate genera that are different between conditions, we provide preliminary evidence for the existence of microbial triggers for AMD. Ethical approval for this study was obtained through the Singapore Health Clinical Institutional Review Board, reference numbers R799/63/2010 and 2010/585/A.

Indexed as

MicrobiotaAdultAgedAged, 80 and overCase-Control StudiesCohort StudiesFemaleHumansMacular DegenerationMaleMiddle AgedNasal CavityPharynxRNA, BacterialRNA, Ribosomal, 16SSingaporeRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID30089174
PMCPMC6082546
OpenAlexW2887429082

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.