Evidence map›Paper›PMID 30088448›Full record

ArticleCurrent drug discovery technologies2020

Identification and Characterization of Chemical Compounds that Inhibit Leucyl-tRNA Synthetase from

Regina Zamacona, Pamela N Chavero, Eduardo Medellin, Yanmei Hu, Casey A Hughes, Nathalie Quach, Megan Keniry, James M Bullard

Open access · greenAbstract read
In one paragraph

Article in Current drug discovery technologies, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Biomolecular NMR assignments · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Regina ZamaconaChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
Pamela N ChaveroChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
Eduardo MedellinChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
Yanmei HuChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
Casey A HughesChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
Nathalie QuachChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
Megan KeniryBiology Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
James M BullardChemistry Department, The University of Texas-RGV, 1201 W. University Drive, Edinburg, TX 78541, United States.
The University of Texas Rio Grande Valley · US

Funding

UTPA RISE Undergraduate Training ProgramR25GM100866 · NIGMS · UNIVERSITY OF TEXAS RIO GRANDE VALLEY · PI DEARTH, ROBERT KEITH, PARSONS, JASON · 2012 to 2016
$1.8M
Construction of a Protein Synthesis System from Pseudomonas aeruginosa for Screening for Antibacterial CandidatesSC3GM098173 · NIGMS · UNIVERSITY OF TEXAS RIO GRANDE VALLEY · PI BULLARD, JAMES M · 2012 to 2019
$861k
NIGMS NIH HHS R25 GM100866NIGMS NIH HHS SC3 GM098173
6 · The paper itself

Abstract

backgroundPseudomonas aeruginosa is an opportunistic multi-drug resistance pathogen implicated as the causative agent in a high-percentage of nosocomial and community acquired bacterial infections. The gene encoding leucyl-tRNA synthetase (LeuRS) from P. aeruginosa was overexpressed in Escherichia coli and the resulting protein was characterized.

methodsLeuRS was kinetically evaluated and the KM values for interactions with leucine, ATP and tRNA were 6.5, 330, and 3.0 μM, respectively. LeuRS was developed into a screening platform using scintillation proximity assay (SPA) technology and used to screen over 2000 synthetic and natural chemical compounds.

resultsThe initial screen resulted in the identification of two inhibitory compounds, BT03C09 and BT03E07. IC50s against LeuRS observed for BT03C09 and BT03E07 were 23 and 15 μM, respectively. The minimum inhibitory concentrations (MIC) were determined against nine clinically relevant bacterial strains. In time-kill kinetic analysis, BT03C09 was observed to inhibit bacterial growth in a bacteriostatic manner, while BT03E07 acted as a bactericidal agent. Neither compound competed with leucine or ATP for binding LeuRS. Limited inhibition was observed in aminoacylation assays with the human mitochondrial form of LeuRS, however when tested in cultures of human cell line, BT03C09 was toxic at all concentration whereas BT03E07 only showed toxic effects at elevated concentrations.

conclusionTwo compounds were identified as inhibitors of LeuRS in a screen of over 2000 natural and synthetic compounds. After characterization one compound (BT03E07) exhibited broad spectrum antibacterial activity while maintaining low toxicity against human mitochondrial LeuRS as well as against human cell cultures.

Indexed as

Amino Acyl-tRNA SynthetasesAnti-Bacterial AgentsBacterial ProteinsDrug Resistance, Multiple, BacterialEnzyme AssaysHigh-Throughput Screening AssaysHumansMicrobial Sensitivity TestsOpportunistic InfectionsPseudomonas aeruginosaPseudomonas InfectionsRecombinant ProteinsSequence AlignmentToxicity Tests, AcuteAmino Acyl-tRNA SynthetasesAnti-Bacterial AgentsBacterial ProteinsLARS2 protein, humanRecombinant Proteinsantibioticsdrug discoveryE. colileucyl-tRNA synthetaseprotein synthesis.Pseudomonas aeruginosa

Identifiers

PMID30088448
PMCPMC6367055
OpenAlexW3171644326

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.