Evidence map›Paper›PMID 30088438›Full record

ArticlePharmacogenomics2018

Comprehensive Ara-C SNP score predicts leukemic cell intracellular ara-CTP levels in pediatric acute myeloid leukemia patients.

Abdelrahman H Elsayed, Xueyuan Cao, Kristine R Crews, Varsha Gandhi, William Plunkett, Jeffrey E Rubnitz, Raul C Ribeiro, Stanley B Pounds, Jatinder K Lamba

Abstract read
In one paragraph

Article in Pharmacogenomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Trial
  2. Pharmacogenomic Score Effectively Personalizes Treatment of Acute Myeloid Leukemia.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Trial
  3. Trial
  4. Article
  5. Article
  6. Impact of genetic variants in the solute carrier (Cancer drug resistance (Alhambra, Calif.) · 2024
    Review
  7. Article
  8. Article
  9. Polygenic Ara-C Response Score Identifies Pediatric Patients With Acute Myeloid Leukemia in Need of Chemotherapy Augmentation.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2022
    Article
  10. A personalized approach to acute myeloid leukemia therapy: current options.Pharmacogenomics and personalized medicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Abdelrahman H ElsayedDepartment of Pharmacotherapy & Translational Research, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA.
Xueyuan CaoDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Kristine R CrewsDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Varsha GandhiDepartment of Experimental Therapeutics, MD Anderson Cancer Center, Houston, TX 77054, USA.
William PlunkettDepartment of Experimental Therapeutics, MD Anderson Cancer Center, Houston, TX 77054, USA.
Jeffrey E RubnitzDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Raul C RibeiroDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Stanley B PoundsDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Jatinder K LambaDepartment of Pharmacotherapy & Translational Research, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA.
St. Jude Children's Research Hospital · USThe University of Texas MD Anderson Cancer Center · USUniversity of Florida · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Pharmacogenomics of Ara-C in AMLR01CA132946 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., POUNDS, STANLEY BARRETT · 2008 to 2025
$5.3M
NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA132946
6 · The paper itself

Abstract

aimCytarabine (Ara-C), a mainstay of acute myeloid leukemia (AML) treatment, is a prodrug requiring activation to ara-CTP for its antileukemic activity. Aim of this study was to evaluate impact of genetic variants in the key genes involved in ara-C metabolism on the leukemic cell intracellular levels of ara-CTP.

methodWe investigated SNPs in 14 ara-C metabolic-pathway genes, for association with intracellular ara-CTP levels, in leukemic cells obtained post-initiation of cytarabine infusion in pediatric AML patients (n = 68).

resultsNine SNPs were significantly associated with leukemic cell intracellular concentration of ara-CTP. A comprehensive ara-CTP-SNP-score (ACSS) was further developed from top four SNPs identified in regression model. Patients were classified into three groups based on ACSS: high-ACSS (score >0), intermediate-ACSS (score = 0) and low-ACSS (score <0). ACSS designation was significant predictor of intracellular ara-CTP levels (p = 0.00012), suggesting a cumulative or synergistic effect of the significant SNPs.

conclusionACSS score designation holds promise in definfing ara-C dose. Validation of the clinical utility of ACSS score in other independent cohorts will help identification of patients with potentially lower or higher levels of the ara-CTP in leukemic cells, thereby opening up opportunities for dose management to reduce toxicity and enhance efficacy.

Indexed as

AdolescentAdultChildChild, PreschoolCytarabineCytidine TriphosphateFemaleHumansInfantLeukemia, Myeloid, AcuteMalePolymorphism, Single NucleotideYoung AdultCytarabineCytidine Triphosphateacute myeloid leukemiacytarabinepharmacogenomicsSNPs

Identifiers

PMID30088438
PMCPMC6219441
OpenAlexW2885837395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.