Evidence map›Paper›PMID 30088208›Full record

ArticleInternational journal of computer assisted radiology and surgery2018

Deep dense multi-path neural network for prostate segmentation in magnetic resonance imaging.

Minh Nguyen Nhat To, Dang Quoc Vu, Baris Turkbey, Peter L Choyke, Jin Tae Kwak

Abstract read
In one paragraph

Article in International journal of computer assisted radiology and surgery, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  18. Segmentation of prostate and prostate zones using deep learning : A multi-MRI vendor analysis.Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Minh Nguyen Nhat ToDepartment of Computer Science and Engineering, Sejong University, Seoul, 05006, South Korea.
Dang Quoc VuDepartment of Computer Science and Engineering, Sejong University, Seoul, 05006, South Korea.
Baris TurkbeyMolecular Imaging Program, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Peter L ChoykeMolecular Imaging Program, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Jin Tae KwakDepartment of Computer Science and Engineering, Sejong University, Seoul, 05006, South Korea. jkwak@sejong.ac.kr.ORCID http://orcid.org/0000-0003-0287-4097

Funding

Prostate Cancer ImagingZIABC010655 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CHOYKE, PETER L · 2009 to 2025
$49.2M
ACADEMIC-INDUSTRIAL PARTNERSHIP FOR TRANSLATION OF PET/TRUS GUIDED INTERVENTIONR01CA204254 · NCI · UNIVERSITY OF TEXAS DALLAS · PI FEI, BAOWEI · 2017 to 2021
$2.0M
MOLECULAR IMAGING DIRECTED, 3D ULTRASOUND-GUIDED, BIOPSY SYSTEMR01CA156775 · NCI · UNIVERSITY OF TEXAS DALLAS · PI FEI, BAOWEI · 2011 to 2016
$1.7M
Targeted fusion biopsy using anti-[18F]FACBC PET/CT and real-time 3D ultrasound gR21CA176684 · NCI · EMORY UNIVERSITY · PI FEI, BAOWEI, MASTER, VIRAJ · 2013 to 2014
$568k
Ministry of Science, ICT and Future Planning 2016R1C1B2012433NCI NIH HHS R01 CA156775NCI NIH HHS R01 CA204254NCI NIH HHS R21 CA176684
6 · The paper itself

Abstract

purposeWe propose an approach of 3D convolutional neural network to segment the prostate in MR images.

methodsA 3D deep dense multi-path convolutional neural network that follows the framework of the encoder-decoder design is proposed. The encoder is built based upon densely connected layers that learn the high-level feature representation of the prostate. The decoder interprets the features and predicts the whole prostate volume by utilizing a residual layout and grouped convolution. A set of sub-volumes of MR images, centered at the prostate, is generated and fed into the proposed network for training purpose. The performance of the proposed network is compared to previously reported approaches.

resultsTwo independent datasets were employed to assess the proposed network. In quantitative evaluations, the proposed network achieved 95.11 and 89.01 Dice coefficients for the two datasets. The segmentation results were robust to variations in MR images. In comparison experiments, the segmentation performance of the proposed network was comparable to the previously reported approaches. In qualitative evaluations, the segmentation results by the proposed network were well matched to the ground truth provided by human experts.

conclusionsThe proposed network is capable of segmenting the prostate in an accurate and robust manner. This approach can be applied to other types of medical images.

Indexed as

Neural Networks, ComputerHumansImaging, Three-DimensionalMagnetic Resonance ImagingMaleProstateDeep learningDense connectionsGrouped convolutionMagnetic resonance imagingProstate segmentation

Identifiers

PMID30088208
PMCPMC6177294

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.