Evidence map›Paper›PMID 30087408›Full record

ArticleScientific reports2018

Development of heme protein based oxygen sensing indicators.

Jiro Nomata, Toru Hisabori

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Synthetic biology of hypoxia.The New phytologist · 2021
    Review
  4. Review
  5. Review
  6. The Interplay betweenMicrobiology spectrum · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Jiro NomataLaboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama, 226-8503, Japan.
Toru HisaboriLaboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama, 226-8503, Japan. thisabor@res.titech.ac.jp.ORCID 0000-0003-2046-0277
Tokyo Institute of Technology · JP

Funding

Japan Science and Technology Agency (JST) CRESTJapan Society for the Promotion of Science (JSPS) 15K07099Japan Society for the Promotion of Science (JSPS) 16H06556Ministry of Education, Culture, Sports, Science, and Technology (MEXT) Dynamic Alliance for Open Innovation Bridging Human, Environment and Materials
6 · The paper itself

Abstract

Oxygen is essential for aerobic life and is required for various oxygen-dependent biochemical reactions. In addition, oxygen plays important roles in multiple intracellular signaling pathways. Thus, to investigate oxygen homeostasis in living cells, we developed a genetically encoded oxygen sensor protein using the oxygen sensor domain of bacterial phosphodiesterase direct oxygen sensor protein (DosP), which was connected to yellow fluorescence protein (YFP) using an optimized antiparallel coiled-coil linker. The resulting ANA-Y (Anaerobic/aerobic sensing yellow fluorescence protein) was highly sensitive to oxygen and had a half saturation concentration of 18 μM. The ANA-Y reacts with dissolved oxygen within 10 s and the resulting increases in fluorescence are reversed with decreases in oxygen concentrations. This sensitivity of the ANA-Y enabled direct determinations of initial photosynthetic oxygen production by cyanobacteria. ANA-Y exhibits reversible fluorescence change of donor YFP following reversible absorbance change of acceptor DosH, and the operating mechanism of this ANA-Y could be used to develop various protein sensor probes for intracellular signaling molecules using natural sensor proteins.

Indexed as

Bacterial ProteinsEscherichia coliEscherichia coli ProteinsFluorescenceHemeproteinsLuminescent ProteinsOxygenPhosphoric Diester HydrolasesRecombinant Fusion ProteinsSpectrometry, FluorescenceBacterial ProteinsdosP protein, E coliEscherichia coli ProteinsHemeproteinsLuminescent ProteinsOxygenPhosphoric Diester HydrolasesRecombinant Fusion Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID30087408
PMCPMC6081431
OpenAlexW2887512348

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.