Evidence map›Paper›PMID 30087181›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds.

Rustem I Litvinov, Olga Kononova, Artem Zhmurov, Kenneth A Marx, Valeri Barsegov, D Thirumalai, John W Weisel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Fibrin as a Versatile Fibrous Biopolymer.Sub-cellular biochemistry · 2026
    Review
  3. Review
  4. Article
  5. Biphasic mechanochemistry of single-chain polymerization.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Molecular Paradigms for Biological Mechanosensing.The journal of physical chemistry. B · 2021
    Article
  17. Fibrinogen and Fibrin.Sub-cellular biochemistry · 2021
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Rustem I LitvinovDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104.
Olga KononovaDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854.ORCID 0000-0001-9267-312X
Artem ZhmurovLaboratory of Computer and Mathematical Modeling of Biological Systems, Moscow Institute of Physics and Technology, Moscow Region 141700, Russian Federation.
Kenneth A MarxDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854.
Valeri BarsegovDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854; weisel@pennmedicine.upenn.edu valeri_barsegov@uml.edu.
D ThirumalaiDepartment of Chemistry, University of Texas at Austin, Austin, TX 78712.
John W WeiselDepartment of Cell and Developmental Biology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104; weisel@pennmedicine.upenn.edu valeri_barsegov@uml.edu.
University of Massachusetts Lowell · USKazan Federal University · RUMoscow Institute of Physics and Technology · RUThe University of Texas at Austin · USUniversity of Pennsylvania · US

Funding

Multiscale modeling and empirical study of a mechanism limiting blood clot growthU01HL116330 · NHLBI · UNIVERSITY OF NOTRE DAME · PI ALBER, MARK · 2014 to 2018
$3.5M
Computational Approaches to Single Molecule Force SpectroscopyR01GM089685 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI THIRUMALAI, DEVARAJAN · 2010 to 2020
$2.9M
Experiment-based multi-scale modeling of the tensile and compressive deformations of fibrinR01HL135254 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PUROHIT, PRASHANT KISHORE · 2017 to 2020
$1.6M
NHLBI NIH HHS R01 HL135254NHLBI NIH HHS U01 HL116330NIGMS NIH HHS R01 GM089685
6 · The paper itself

Abstract

Fibrin formation and mechanical stability are essential in thrombosis and hemostasis. To reveal how mechanical load impacts fibrin, we carried out optical trap-based single-molecule forced unbinding experiments. The strength of noncovalent A:a knob-hole bond stabilizing fibrin polymers first increases with tensile force (catch bonds) and then decreases with force when the force exceeds a critical value (slip bonds). To provide the structural basis of catch-slip-bond behavior, we analyzed crystal structures and performed molecular modeling of A:a knob-hole complex. The movable flap (residues γ295 to γ305) containing the weak calcium-binding site γ2 serves as a tension sensor. Flap dissociation from the B domain in the γ-nodule and translocation to knob 'A' triggers hole 'a' closure, resulting in the increase of binding affinity and prolonged bond lifetimes. The discovery of biphasic kinetics of knob-hole bond rupture is quantitatively explained by using a theory, formulated in terms of structural transitions in the binding pocket between the low-affinity (slip) and high-affinity (catch) states. We provide a general framework to understand the mechanical response of protein pairs capable of tension-induced remodeling of their association interface. Strengthening of the A:a knob-hole bonds at 30- to 40-pN forces might favor formation of nascent fibrin clots subject to hydrodynamic shear in vivo.

Indexed as

Binding SitesCalciumFibrinHumansMultiprotein ComplexesCalciumFibrinMultiprotein Complexescatch-slip bondfibrin polymerizationfluctuating bottleneckGPU computinginterface remodeling

Identifiers

PMID30087181
PMCPMC6112739
OpenAlexW2885537101

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.