Evidence map›Paper›PMID 30086303›Full record

ArticleDevelopmental cell2018

The UPR Activator ATF6 Responds to Proteotoxic and Lipotoxic Stress by Distinct Mechanisms.

Arvin B Tam, Lindsay S Roberts, Vivek Chandra, Io Guane Rivera, Daniel K Nomura, Douglass J Forbes, Maho Niwa

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 1 synthesis or guideline pooled it, 171 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Ubiquitin-specific peptidase-19 links TDP-43 aggregation to ER stress.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  11. Review
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  14. Growth hormone - releasing hormone in the immune system.Reviews in endocrine & metabolic disorders · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Arvin B TamDivision of Biological Sciences, Section of Molecular Biology, University of California, San Diego, NSB#1, Rm5328, 9500 Gilman Drive, La Jolla, CA 92093-0377, USA.
Lindsay S RobertsDepartment of Chemistry, Molecular and Cell Biology, and Nutritional Sciences and Toxicology, University of California, Berkeley, 127 Morgan Hall, Berkeley, CA 94720, USA.
Vivek ChandraDivision of Biological Sciences, Section of Molecular Biology, University of California, San Diego, NSB#1, Rm5328, 9500 Gilman Drive, La Jolla, CA 92093-0377, USA.
Io Guane RiveraDivision of Biological Sciences, Section of Molecular Biology, University of California, San Diego, NSB#1, Rm5328, 9500 Gilman Drive, La Jolla, CA 92093-0377, USA.
Daniel K NomuraDepartment of Chemistry, Molecular and Cell Biology, and Nutritional Sciences and Toxicology, University of California, Berkeley, 127 Morgan Hall, Berkeley, CA 94720, USA.
Douglass J ForbesDivision of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, 2124A Pacific Hall, 9500 Gilman Drive, La Jolla, CA 92093-0347, USA.
Maho NiwaDivision of Biological Sciences, Section of Molecular Biology, University of California, San Diego, NSB#1, Rm5328, 9500 Gilman Drive, La Jolla, CA 92093-0377, USA. Electronic address: niwa@ucsd.edu.
University of California, San Diego · USUniversity of California, Berkeley · US

Funding

FUNCTIONAL STUDY OF NATIVE AND SYNTHETIC NUCLEIR01GM033279 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FORBES, DOUGLASS JANE · 1985 to 2015
$7.0M
Roles of the Unfolded Protein Response in Cell CycleR01GM087415 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maho R Niwa · 2010 to 2026
$5.5M
Annotating the Role of Dysregulated Inositol Phosphate Metabolism in Malignant CaR01CA172667 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOMURA, DANIEL · 2013 to 2017
$1.7M
NCI NIH HHS R01 CA172667NIGMS NIH HHS R01 GM033279NIGMS NIH HHS R01 GM087415
6 · The paper itself

Abstract

The unfolded protein response (UPR) is induced by proteotoxic stress of the endoplasmic reticulum (ER). Here we report that ATF6, a major mammalian UPR sensor, is also activated by specific sphingolipids, dihydrosphingosine (DHS) and dihydroceramide (DHC). Single mutations in a previously undefined transmembrane domain motif that we identify in ATF6 incapacitate DHS/DHC activation while still allowing proteotoxic stress activation via the luminal domain. ATF6 thus possesses two activation mechanisms: DHS/DHC activation and proteotoxic stress activation. Reporters constructed to monitor each mechanism show that phenobarbital-induced ER membrane expansion depends on transmembrane domain-induced ATF6. DHS/DHC addition preferentially induces transcription of ATF6 target lipid biosynthetic and metabolic genes over target ER chaperone genes. Importantly, ATF6 containing a luminal achromatopsia eye disease mutation, unresponsive to proteotoxic stress, can be activated by fenretinide, a drug that upregulates DHC, suggesting a potential therapy for this and other ATF6-related diseases including heart disease and stroke.

Indexed as

Activating Transcription Factor 6Cell LineEndoplasmic ReticulumEndoplasmic Reticulum StressFenretinideHumansProtein Serine-Threonine KinasesSphingosineTranscription, GeneticUnfolded Protein ResponseActivating Transcription Factor 6ATF6 protein, humanFenretinideProtein Serine-Threonine KinasessafingolSphingosineATF6dihydroceramidedihydrosphingosineERlipotoxic stressproteotoxic stresssphingolipidstranscription upregulationtransmembrane domainunfolded protein response

Identifiers

PMID30086303
PMCPMC6467773
OpenAlexW2885875075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.