Evidence map›Paper›PMID 30086300›Full record

ArticleDevelopmental cell2018

Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification.

Elke F Roovers, Lucas J T Kaaij, Stefan Redl, Alfred W Bronkhorst, Kay Wiebrands, António M de Jesus Domingues, Hsin-Yi Huang, Chung-Ting Han, Stephan Riemer, Roland Dosch and 5 more

Abstract read
In one paragraph

Article in Developmental cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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  16. Germ granules in development.Development (Cambridge, England) · 2023
    Article
  17. Review
  18. Stay on the road: from germ cell specification to gonadal colonization in mammals.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Elke F RooversBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Lucas J T KaaijBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Stefan RedlBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Alfred W BronkhorstBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Kay WiebrandsHubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
António M de Jesus DominguesBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Hsin-Yi HuangHubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Chung-Ting HanGenomics Core Facility, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany; CeGaT GmbH, Center for Genomics and Transcriptomics, Paul-Ehrlich-Straße 23, 72076 Tübingen, Germany.
Stephan RiemerInstitute of Developmental Biochemistry, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
Roland DoschInstitute of Developmental Biochemistry, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
Willi SalvenmoserInstitute of Zoology, Center of Molecular Bioscience, University of Innsbruck, Technikerstraβe 25, 6020 Innsbruck, Austria.
Dominic GrünHubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands; Max Planck Institute of Immunology and Epigenetics, Stübeweg 51, 79108 Freiburg, Germany.
Falk ButterQuantitative Proteomics Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Alexander van OudenaardenHubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
René F KettingBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany. Electronic address: r.ketting@imb.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phase separation represents an important form of subcellular compartmentalization. However, relatively little is known about how the formation or disassembly of such compartments is regulated. In zebrafish, the Balbiani body (Bb) and the germ plasm (Gp) are intimately linked phase-separated structures essential for germ cell specification and home to many germ cell-specific mRNAs and proteins. Throughout development, these structures occur as a single large aggregate (Bb), which disperses throughout oogenesis and upon fertilization accumulates again into relatively large assemblies (Gp). Formation of the Bb requires Bucky ball (Buc), a protein with prion-like properties. We found that the multi-tudor domain-containing protein Tdrd6a interacts with Buc, affecting its mobility and aggregation properties. Importantly, lack of this regulatory interaction leads to significant defects in germ cell development. Our work presents insights into how prion-like protein aggregations can be regulated and highlights the biological relevance of such regulatory events.

Indexed as

AnimalsCytoplasmGerm CellsOocytesOogenesisOrganellesRNA, MessengerZebrafishZebrafish Proteinsbuc protein, zebrafishRNA, MessengerZebrafish Proteinsarginine methylationBalbiani bodyBucky ballgerm plasmphase separationprimordial germ cellprion-like domainTdrd6Tudor domainzebrafish

Identifiers

PMID30086300
PMCPMC6084408

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.