Evidence map›Paper›PMID 30085653›Full record

ArticleAnalytical chemistry2018

Native Proteomics in Discovery Mode Using Size-Exclusion Chromatography-Capillary Zone Electrophoresis-Tandem Mass Spectrometry.

Xiaojing Shen, Qiang Kou, Ruiqiong Guo, Zhichang Yang, Daoyang Chen, Xiaowen Liu, Heedeok Hong, Liangliang Sun

Abstract read
In one paragraph

Article in Analytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Capillary Electrophoresis-Mass Spectrometry for Top-Down Proteomics.Annual review of analytical chemistry (Palo Alto, Calif.) · 2025
    Review
  8. Article
  9. Native Proteomics by Capillary Zone Electrophoresis-Mass Spectrometry.Angewandte Chemie (International ed. in English) · 2024
    Article
  10. Proteomic strategies to interrogate the Fe-S proteome.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Top-down proteomics.Nature reviews. Methods primers · 2024
    Article
  17. Multidimensional Separations in Top-Down Proteomics.Analytical science advances · 2023
    Article
  18. Dissecting the structural heterogeneity of proteins by native mass spectrometry.Protein science : a publication of the Protein Society · 2023
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xiaojing ShenDepartment of Chemistry , Michigan State University , 578 South Shaw Lane , East Lansing , Michigan 48824 , United States.ORCID 0000-0003-2079-9115
Qiang KouDepartment of BioHealth Informatics , Indiana University-Purdue University Indianapolis , 719 Indiana Avenue , Indianapolis , Indiana 46202 , United States.
Ruiqiong GuoDepartment of Chemistry , Michigan State University , 578 South Shaw Lane , East Lansing , Michigan 48824 , United States.
Zhichang YangDepartment of Chemistry , Michigan State University , 578 South Shaw Lane , East Lansing , Michigan 48824 , United States.
Daoyang ChenDepartment of Chemistry , Michigan State University , 578 South Shaw Lane , East Lansing , Michigan 48824 , United States.
Xiaowen LiuDepartment of BioHealth Informatics , Indiana University-Purdue University Indianapolis , 719 Indiana Avenue , Indianapolis , Indiana 46202 , United States.
Heedeok HongDepartment of Chemistry , Michigan State University , 578 South Shaw Lane , East Lansing , Michigan 48824 , United States.
Liangliang SunDepartment of Chemistry , Michigan State University , 578 South Shaw Lane , East Lansing , Michigan 48824 , United States.ORCID 0000-0001-8939-5042

Funding

Computational tools for top down mass spectrometry based proteoform identification and proteogenomicsR01GM118470 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI Xiaowen Liu · 2016 to 2026
$2.7M
Quantitative proteomics of Zebrafish embryos and blastomeresR01GM125991 · NIGMS · MICHIGAN STATE UNIVERSITY · PI SUN, LIANGLIANG · 2018 to 2022
$1.7M
Folding and degradation of membrane proteinsR01GM118685 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HONG, HEEDEOK · 2016 to 2020
$1.5M
NIGMS NIH HHS R01 GM118470NIGMS NIH HHS R01 GM118685NIGMS NIH HHS R01 GM125991
6 · The paper itself

Abstract

Native proteomics aims to characterize complex proteomes under native conditions and ultimately produces a full picture of endogenous protein complexes in cells. It requires novel analytical platforms for high-resolution and liquid-phase separation of protein complexes prior to native mass spectrometry (MS) and MS/MS. In this work, size-exclusion chromatography (SEC)-capillary zone electrophoresis (CZE)-MS/MS was developed for native proteomics in discovery mode, resulting in the identification of 144 proteins, 672 proteoforms, and 23 protein complexes from the Escherichia coli proteome. The protein complexes include four protein homodimers, 16 protein-metal complexes, two protein-[2Fe-2S] complexes, and one protein-glutamine complex. Half of them have not been reported in the literature. This work represents the first example of online liquid-phase separation-MS/MS for the characterization of a complex proteome under the native condition, offering the proteomics community an efficient and simple platform for native proteomics.

Indexed as

ProteomicsChromatography, GelElectrophoresis, CapillaryEscherichia coli ProteinsTandem Mass SpectrometryEscherichia coli Proteins

Identifiers

PMID30085653
PMCPMC6156775

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.