Evidence map›Paper›PMID 30084848›Full record

ArticleScientific data2018

A tissue-based draft map of the murine MHC class I immunopeptidome.

Heiko Schuster, Wenguang Shao, Tobias Weiss, Patrick G A Pedrioli, Patrick Roth, Michael Weller, David S Campbell, Eric W Deutsch, Robert L Moritz, Oliver Planz and 3 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Heiko SchusterDepartment of Immunology, Interfaculty Institute for Cell Biology, University of Tübingen, Tübingen 72076, Germany.
Wenguang ShaoDepartment of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland.
Tobias WeissDepartment of Neurology and Brain Tumor Center, University Hospital Zurich and University of Zurich, 8091 Zurich, Switzerland.
Patrick G A PedrioliDepartment of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland.
Patrick RothDepartment of Neurology and Brain Tumor Center, University Hospital Zurich and University of Zurich, 8091 Zurich, Switzerland.
Michael WellerDepartment of Neurology and Brain Tumor Center, University Hospital Zurich and University of Zurich, 8091 Zurich, Switzerland.
David S CampbellInstitute for Systems Biology, Seattle, Washington 98109, USA.
Eric W DeutschInstitute for Systems Biology, Seattle, Washington 98109, USA.
Robert L MoritzInstitute for Systems Biology, Seattle, Washington 98109, USA.
Oliver PlanzDepartment of Immunology, Interfaculty Institute for Cell Biology, University of Tübingen, Tübingen 72076, Germany.
Hans-Georg RammenseeDepartment of Immunology, Interfaculty Institute for Cell Biology, University of Tübingen, Tübingen 72076, Germany.
Ruedi AebersoldDepartment of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland.ORCID 0000-0002-9576-3267
Etienne CaronDepartment of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland.

Funding

Advancing data and metadata standards for proteomics mass spectraR24GM127667 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC · 2017 to 2019
$1.2M
European Research Council 670821NIGMS NIH HHS R24 GM127667
6 · The paper itself

Abstract

The large array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) class I molecules is referred to as the MHC class I immunopeptidome. Although the MHC class I immunopeptidome is ubiquitous in mammals and represents a critical component of the immune system, very little is known, in any species, about its composition across most tissues and organs in vivo. We applied mass spectrometry (MS) technologies to draft the first tissue-based atlas of the murine MHC class I immunopeptidome in health. Peptides were extracted from 19 normal tissues from C57BL/6 mice and prepared for MS injections, resulting in a total number of 28,448 high-confidence H2D

Indexed as

Histocompatibility Antigens Class IOrgan SpecificityAnimalsMass SpectrometryMiceMice, Inbred C57BLPeptidesHistocompatibility Antigens Class IPeptides

Identifiers

PMID30084848
PMCPMC6080492

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.