Evidence map›Paper›PMID 30084161›Full record

ReviewMolecular genetics & genomic medicine2018

Exome data clouds the pathogenicity of genetic variants in Pulmonary Arterial Hypertension.

Yeganeh Abbasi, Javad Jabbari, Reza Jabbari, Charlotte Glinge, Seyed Bahador Izadyar, Edda Spiekerkoetter, Roham T Zamanian, Jørn Carlsen, Jacob Tfelt-Hansen

Open access · goldAbstract readReview
In one paragraph

Review in Molecular genetics & genomic medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Yeganeh AbbasiHeart Centre, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.ORCID 0000-0002-9157-2594
Javad JabbariLEO Pharma A/S, Ballerup, Denmark.
Reza JabbariHeart Centre, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
Charlotte GlingeHeart Centre, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
Seyed Bahador IzadyarHeart Centre, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
Edda SpiekerkoetterDivision of Pulmonary and Critical Care, Stanford University School of Medicine, California.
Roham T ZamanianDivision of Pulmonary and Critical Care, Stanford University School of Medicine, California.
Jørn CarlsenHeart Centre, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
Jacob Tfelt-HansenHeart Centre, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
Copenhagen University Hospital · DKStanford University · USLeo Pharma (Denmark) · DKUniversity of Copenhagen · DK

Funding

Novo Nordisk
6 · The paper itself

Abstract

backgroundWe aimed to provide a set of previously reported PAH-associated missense and nonsense variants, and evaluate the pathogenicity of those variants.

methodsThe Human Gene Mutation Database, PubMed, and Google Scholar were searched for previously reported PAH-associated genes and variants. Thereafter, both exome sequencing project and exome aggregation consortium as background population searched for previously reported PAH-associated missense and nonsense variants. The pathogenicity of previously reported PAH-associated missense variants evaluated by using four in silico prediction tools.

resultsIn total, 14 PAH-associated genes and 180 missense and nonsense variants were gathered. The BMPR2, the most frequent reported gene, encompasses 135 of 180 missense and nonsense variants. The exome sequencing project comprised 9, and the exome aggregation consortium counted 25 of 180 PAH-associated missense and nonsense variants. The TOPBP1 and ENG genes are unlikely to be the monogenic cause of PAH pathogenesis based on allele frequency in background population and prediction analysis.

conclusionThis is the first evaluation of previously reported PAH-associated missense and nonsense variants. The BMPR2 identified as the major gene out of 14 PAH-associated genes. Based on findings, the ENG and TOPBP1 gene are not likely to be the monogenic cause of PAH.

Indexed as

Codon, NonsenseMutation, MissenseBone Morphogenetic Protein Receptors, Type IICarrier ProteinsDNA-Binding ProteinsEndoglinExomeHumansHypertension, PulmonaryNuclear ProteinsBMPR2 protein, humanBone Morphogenetic Protein Receptors, Type IICarrier ProteinsCodon, NonsenseDNA-Binding ProteinsEndoglinENG protein, humanNuclear ProteinsTOPBP1 protein, humanESPexome sequencing projectHGMDPAH-associated genepulmonary arterial hypertension

Identifiers

PMID30084161
PMCPMC6160702
OpenAlexW2885992982

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.