Evidence map›Paper›PMID 30084080›Full record

ArticleJournal of computer-aided molecular design2018

SAMPL6: calculation of macroscopic pK

Edithe Selwa, Ian M Kenney, Oliver Beckstein, Bogdan I Iorga

Abstract read
In one paragraph

Article in Journal of computer-aided molecular design, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Improving Small Molecule pKFrontiers in chemistry · 2022
    Article
  6. Evaluation of log P, pKJournal of computer-aided molecular design · 2021
    Article
  7. Overview of the SAMPL6 pKJournal of computer-aided molecular design · 2021
    Article
  8. Standard state free energies, not pKJournal of computer-aided molecular design · 2020
    Article
  9. Prediction of octanol-water partition coefficients for the SAMPL6-Journal of computer-aided molecular design · 2020
    Article
  10. Correlation between molecular acidity (pKJournal of molecular modeling · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Edithe SelwaInstitut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Saclay, Labex LERMIT, 1 Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.
Ian M KenneyDepartment of Physics, Arizona State University, P.O. Box 871504, Tempe, AZ, 85287-1504, USA.
Oliver BecksteinDepartment of Physics, Arizona State University, P.O. Box 871504, Tempe, AZ, 85287-1504, USA. oliver.beckstein@asu.edu.ORCID 0000-0003-1340-0831
Bogdan I IorgaInstitut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Saclay, Labex LERMIT, 1 Avenue de la Terrasse, 91198, Gif-sur-Yvette, France. bogdan.iorga@cnrs.fr.ORCID 0000-0003-0392-1350

Funding

Molecular mechanisms of secondary active transportersR01GM118772 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI BECKSTEIN, OLIVER · 2016 to 2020
$1.5M
NIGMS NIH HHS R01 GM118772
6 · The paper itself

Abstract

Macroscopic pK

Indexed as

Models, ChemicalDatabases, ChemicalHeterocyclic CompoundsHydrogen-Ion ConcentrationMolecular StructureQuantum TheorySolventsThermodynamicsHeterocyclic CompoundsSolventspHpK aQuantum chemistrySAMPL challenge

Identifiers

PMID30084080
PMCPMC6240492

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.