Evidence map›Paper›PMID 30083476›Full record

ArticlePeerJ2018

Co-occurring nematodes and bacteria in submarine canyon sediments.

Jadwiga Rzeznik-Orignac, Antoine Puisay, Evelyne Derelle, Erwan Peru, Nadine Le Bris, Pierre E Galand

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 8 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Jadwiga Rzeznik-OrignacLaboratoire d'Ecogéochimie des Environnements Benthiques, LECOB, Sorbonne Université, CNRS, Banyuls-sur-Mer, France.
Antoine PuisayLaboratoire d'Ecogéochimie des Environnements Benthiques, LECOB, Sorbonne Université, CNRS, Banyuls-sur-Mer, France.
Evelyne DerelleLaboratoire de Biologie Intégrative des Organismes Marins, Sorbonne Université, CNRS, Banyuls-sur-Mer, France.
Erwan PeruLaboratoire d'Ecogéochimie des Environnements Benthiques, LECOB, Sorbonne Université, CNRS, Banyuls-sur-Mer, France.
Nadine Le BrisLaboratoire d'Ecogéochimie des Environnements Benthiques, LECOB, Sorbonne Université, CNRS, Banyuls-sur-Mer, France.
Pierre E GalandLaboratoire d'Ecogéochimie des Environnements Benthiques, LECOB, Sorbonne Université, CNRS, Banyuls-sur-Mer, France.
Sorbonne Université · FRCentre de Recherches Insulaires et Observatoire de l'Environnement · PFCentre National de la Recherche Scientifique · FRLaboratoire d'Ecogéochimie des Environnements Benthiques · FRLaboratoire des Sciences de l'Environnement Marin · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In submarine canyon sediments, bacteria and nematodes dominate the benthic biomass and play a key role in nutrient cycling and energy transfer. The diversity of these communities remains, however, poorly studied. This work aims at describing the composition of bacteria and nematode communities in the Lacaze-Duthiers submarine canyon in the north-western Mediterranean Sea. We targeted three sediment depths for two consecutive years and investigated the communities using nuclear markers (18S rRNA and 16S rRNA genes). High throughput sequencing combined to maximal information coefficient (MIC) statistical analysis allowed us to identify, for the first time, at the same small scale, the community structures and the co-occurrence of nematodes and bacteria Operational Taxonomic Units across the sediment cores. The associations detected by MIC revealed marked patterns of co-occurrences between the bacteria and nematodes in the sediment of the canyon and could be linked to the ecological requirements of individual bacteria and nematodes. For the bacterial community,

Indexed as

16S18SBacteriaCanyon Lacaze-DuthiersMarine biodiversityMediterranean SeaMeiofaunaMetabarcordingMolecular approachNematodes

Identifiers

PMID30083476
PMCPMC6074754
OpenAlexW2885355025

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.