ArticleFrontiers in microbiology2018
New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes.
Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.
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Who cites it
31 citing papers in PubMed, 1 synthesis or guideline pooled it.
- The Landscape of Genetic Content in the Gut and Oral Human Microbiome.Cell host & microbe · 2019Pooled it
- Candidatus List No. 6.International journal of systematic and evolutionary microbiology · 2025Article
- Linking soil microbial genomic features to forest-to-pasture conversion in the Amazon.Microbiology spectrum · 2025Article
- Diversity of bacterial communities in wetlands of Calakmul Biosphere Reserve: a comparative analysis between conserved and semi-urbanized zones in pre-Mayan Train era.BMC microbiology · 2024Article
- The impact of land-use changes and management intensification on bacterial communities in the last decade: a review.Applied and environmental microbiology · 2024Review
- Genomic representativeness and chimerism in large collections of SAGs and MAGs of marine prokaryoplankton.Microbiome · 2024Article
- Genome streamlining in Parcubacteria transitioning from soil to groundwater.Environmental microbiome · 2024Article
- Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies.Genome biology · 2024Article
- BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis.Nature communications · 2024Article
- Trait biases in microbial reference genomes.Scientific data · 2023Article
- Influence of soil nutrients on the presence and distribution of CPR bacteria in a long-term crop rotation experiment.Frontiers in microbiology · 2023Article
- Critical assessment of pan-genomic analysis of metagenome-assembled genomes.Briefings in bioinformatics · 2022Article
- Genome-resolved metagenomics reveals novel archaeal and bacterial genomes from Amazonian forest and pasture soils.Microbial genomics · 2022Article
- Microbial ecology and evolution is key to pandemics: using the coronavirus model to mitigate future public health challenges.Heliyon · 2022Review
- Forest gaps alter the soil bacterial community of weeping cypress plantations by modulating the understory plant diversity.Frontiers in plant science · 2022Article
- Machine Learning and Deep Learning Applications in Metagenomic Taxonomy and Functional Annotation.Frontiers in microbiology · 2022Review
- Rokubacteria in Northern Peatlands: Habitat Preferences and Diversity Patterns.Microorganisms · 2021Article
- Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil.mSphere · 2021Article
- Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding.Microbial ecology · 2021Article
- Increasing the power of interpretation for soil metaproteomics data.Microbiome · 2021Article
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Authors and funding
13 authors.
Funding
Abstract
Deforestation in the Brazilian Amazon occurs at an alarming rate, which has broad effects on global greenhouse gas emissions, carbon storage, and biogeochemical cycles. In this study, soil metagenomes and metagenome-assembled genomes (MAGs) were analyzed for alterations to microbial community composition, functional groups, and putative physiology as it related to land-use change and tropical soil. A total of 28 MAGs were assembled encompassing 10 phyla, including both dominant and rare biosphere lineages. Amazon Acidobacteria subdivision 3, Melainabacteria, Microgenomates, and Parcubacteria were found exclusively in pasture soil samples, while Candidatus Rokubacteria was predominant in the adjacent rainforest soil. These shifts in relative abundance between land-use types were supported by the different putative physiologies and life strategies employed by the taxa. This research provides unique biological insights into candidate phyla in tropical soil and how deforestation may impact the carbon cycle and affect climate change.
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