Evidence map›Paper›PMID 30082871›Full record

ArticleNature medicine2018

A high-fidelity Cas9 mutant delivered as a ribonucleoprotein complex enables efficient gene editing in human hematopoietic stem and progenitor cells.

Christopher A Vakulskas, Daniel P Dever, Garrett R Rettig, Rolf Turk, Ashley M Jacobi, Michael A Collingwood, Nicole M Bode, Matthew S McNeill, Shuqi Yan, Joab Camarena and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 491 papers.

0numbers the graph read from it
0cells of the map it votes in
491citing papers in PubMed
32.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

491 citing papers in PubMed, 782 citations in OpenAlex.

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431 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Christopher A VakulskasIntegrated DNA Technologies, Inc., Coralville, IA, USA.ORCID http://orcid.org/0000-0001-8510-4332
Daniel P DeverDepartment of Pediatrics, Stanford University, Stanford, CA, USA.
Garrett R RettigIntegrated DNA Technologies, Inc., Coralville, IA, USA.ORCID http://orcid.org/0000-0003-4634-5787
Rolf TurkIntegrated DNA Technologies, Inc., Coralville, IA, USA.ORCID http://orcid.org/0000-0003-1283-9594
Ashley M JacobiIntegrated DNA Technologies, Inc., Coralville, IA, USA.ORCID http://orcid.org/0000-0002-9364-6518
Michael A CollingwoodIntegrated DNA Technologies, Inc., Coralville, IA, USA.ORCID http://orcid.org/0000-0002-8849-4038
Nicole M BodeIntegrated DNA Technologies, Inc., Coralville, IA, USA.ORCID http://orcid.org/0000-0001-7209-303X
Matthew S McNeillIntegrated DNA Technologies, Inc., Coralville, IA, USA.
Shuqi YanIntegrated DNA Technologies, Inc., Coralville, IA, USA.
Joab CamarenaDepartment of Pediatrics, Stanford University, Stanford, CA, USA.
Ciaran M LeeDepartment of Bioengineering, Rice University, Houston, TX, USA.ORCID http://orcid.org/0000-0002-0789-9149
So Hyun ParkDepartment of Bioengineering, Rice University, Houston, TX, USA.
Volker WiebkingDepartment of Pediatrics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9429-5254
Rasmus O BakDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0002-7383-0297
Natalia Gomez-OspinaDepartment of Pediatrics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6740-1154
Mara Pavel-DinuDepartment of Pediatrics, Stanford University, Stanford, CA, USA.
Wenchao SunBiomaterials and Advanced Drug Delivery Laboratory, Stanford University School of Medicine, Palo Alto, CA, USA.ORCID http://orcid.org/0000-0003-4306-2896
Gang BaoDepartment of Bioengineering, Rice University, Houston, TX, USA.
Matthew H PorteusDepartment of Pediatrics, Stanford University, Stanford, CA, USA. mporteus@stanford.edu.
Mark A BehlkeIntegrated DNA Technologies, Inc., Coralville, IA, USA. mbehlke@idtdna.com.ORCID http://orcid.org/0000-0002-4218-857X
Integrated DNA Technologies (United States) · USStanford University · USRice University · USAarhus University · DKStanford Medicine · US

Funding

Genome Editing by Homologous Recombination to Create HIV Resistant Immune SystemR01AI120766 · NIAID · STANFORD UNIVERSITY · PI PORTEUS, MATTHEW H · 2015 to 2019
$2.0M
Pre-Clinical Development of Nuclease Mediated Gene Therapy for SCIDR01AI097320 · NIAID · STANFORD UNIVERSITY · PI PORTEUS, MATTHEW H · 2013 to 2017
$1.9M
NIAID NIH HHS R01 AI097320NIAID NIH HHS R01 AI120766
6 · The paper itself

Abstract

Translation of the CRISPR-Cas9 system to human therapeutics holds high promise. However, specificity remains a concern especially when modifying stem cell populations. We show that existing rationally engineered Cas9 high-fidelity variants have reduced on-target activity when using the therapeutically relevant ribonucleoprotein (RNP) delivery method. Therefore, we devised an unbiased bacterial screen to isolate variants that retain activity in the RNP format. Introduction of a single point mutation, p.R691A, in Cas9 (high-fidelity (HiFi) Cas9) retained the high on-target activity of Cas9 while reducing off-target editing. HiFi Cas9 induces robust AAV6-mediated gene targeting at five therapeutically relevant loci (HBB, IL2RG, CCR5, HEXB, and TRAC) in human CD34

Indexed as

Gene EditingAnemia, Sickle CellAntigens, CD34Base SequenceCRISPR-Associated Protein 9Escherichia coliHEK293 CellsHematopoietic Stem CellsHumansMutationRibonucleoproteinsAntigens, CD34CRISPR-Associated Protein 9Ribonucleoproteins

Identifiers

PMID30082871
PMCPMC6107069
OpenAlexW2886819502

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.