Evidence map›Paper›PMID 30082754›Full record

ArticleNature communications2018

Biosensor libraries harness large classes of binding domains for construction of allosteric transcriptional regulators.

Javier F Juárez, Begoña Lecube-Azpeitia, Stuart L Brown, Christopher D Johnston, George M Church

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Transcription factor-based biosensors for screening and dynamic regulation.Frontiers in bioengineering and biotechnology · 2023
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Recent trends in biocatalysis.Chemical Society reviews · 2021
    Review
  20. Transcription Factors as Evolvable Biosensors.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Javier F JuárezDepartment of Genetics, Harvard Medical School, 77 Av. Louis Pasteur, Boston, MA, 02115, USA.
Begoña Lecube-AzpeitiaDepartment of Genetics, Harvard Medical School, 77 Av. Louis Pasteur, Boston, MA, 02115, USA.
Stuart L BrownDepartment of Genetics, Harvard Medical School, 77 Av. Louis Pasteur, Boston, MA, 02115, USA.
Christopher D JohnstonThe Forsyth Institute, 245 First St., Cambridge, MA, 02142, USA.ORCID http://orcid.org/0000-0002-6765-2383
George M ChurchDepartment of Genetics, Harvard Medical School, 77 Av. Louis Pasteur, Boston, MA, 02115, USA. gchurch@genetics.med.harvard.edu.ORCID http://orcid.org/0000-0003-3535-2076
Harvard University · US

Funding

The SyngenicDNA and μPOET Platform: Overcoming Innate Barriers to Genetic Engineering in Bacteria.R01DE027850 · NIDCR · FRED HUTCHINSON CANCER RESEARCH CENTER · PI JOHNSTON, CHRISTOPHER D · 2017 to 2021
$4.9M
DOE | Office of Science (SC) DE-FG02-02ER63445NIDCR NIH HHS R01 DE027850
6 · The paper itself

Abstract

The ability of bacteria to sense specific molecules within their environment and trigger metabolic responses in accordance is an invaluable biotechnological resource. While many transcription factors (TFs) mediating such processes have been studied, only a handful have been leveraged for molecular biology applications. To expand the repertoire of biotechnologically relevant sensors we present a strategy for the construction and testing of chimeric TF libraries, based on the fusion of highly soluble periplasmic binding proteins (PBPs) with DNA-binding domains (DBDs). We validate this concept by constructing and functionally testing two unique sense-and-respond regulators for benzoate, an environmentally and industrially relevant metabolite. This work will enable the development of tailored biosensors for novel synthetic regulatory circuits.

Indexed as

Biosensing TechniquesBiotechnologyAllosteric RegulationAllosteric SiteBenzoatesCloning, MolecularEscherichia coliFlow CytometryGene LibraryGene Regulatory NetworksGenes, ReporterGenetic VectorsLigandsPhosphorylationPlasmidsProtein BindingBenzoatesLigandsTranscription Factors

Identifiers

PMID30082754
PMCPMC6079105
OpenAlexW2885322683

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.