Evidence map›Paper›PMID 30082739›Full record

ArticleNature ecology & evolution2018

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Anna V Kukekova, Jennifer L Johnson, Xueyan Xiang, Shaohong Feng, Shiping Liu, Halie M Rando, Anastasiya V Kharlamova, Yury Herbeck, Natalya A Serdyukova, Zijun Xiong and 13 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature ecology & evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 154 citations in OpenAlex.

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  10. The genome sequence of the red fox,Wellcome open research · 2025
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  19. The Shepherd and the Hunter: A Genomic Comparison of Italian Dog Breeds.Animals : an open access journal from MDPI · 2023
    Article
  20. A missense mutation inScience advances · 2023
    Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 4 countries.

Anna V KukekovaAnimal Sciences Department, College of ACES, University of Illinois at Urbana, Champaign, IL, USA. avk@illinois.edu.ORCID http://orcid.org/0000-0001-7027-3715
Jennifer L JohnsonAnimal Sciences Department, College of ACES, University of Illinois at Urbana, Champaign, IL, USA.
Xueyan XiangChina National Genebank, BGI -Shenzhen, Shenzhen, China.
Shaohong FengChina National Genebank, BGI -Shenzhen, Shenzhen, China.
Shiping LiuChina National Genebank, BGI -Shenzhen, Shenzhen, China.
Halie M RandoAnimal Sciences Department, College of ACES, University of Illinois at Urbana, Champaign, IL, USA.ORCID http://orcid.org/0000-0001-7688-1770
Anastasiya V KharlamovaInstitute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Yury HerbeckInstitute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Natalya A SerdyukovaInstitute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Zijun XiongChina National Genebank, BGI -Shenzhen, Shenzhen, China.ORCID http://orcid.org/0000-0003-3923-0703
Violetta BeklemischevaInstitute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Klaus-Peter KoepfliSmithsonian Conservation Biology Institute, National Zoological Park, Washington DC, USA.
Rimma G GulevichInstitute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Anastasiya V VladimirovaInstitute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Jessica P HekmanAnimal Sciences Department, College of ACES, University of Illinois at Urbana, Champaign, IL, USA.
Polina L PerelmanInstitute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Aleksander S GraphodatskyInstitute of Molecular and Cellular Biology of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Stephen J O'BrienTheodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, Saint Petersburg, Russia.
Xu WangDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-7594-5004
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Gregory M AclandBaker Institute for Animal Health, Cornell University, College of Veterinary Medicine, Ithaca, NY, USA.
Lyudmila N TrutInstitute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Guojie ZhangChina National Genebank, BGI -Shenzhen, Shenzhen, China. guojie.zhang@bio.ku.dk.ORCID http://orcid.org/0000-0001-6860-1521
Institute of Cytology and Genetics · RUChina National GeneBank · CNCornell University · USUniversity of Illinois Urbana-Champaign · USNovosibirsk State University · RUSiberian Branch of the Russian Academy of Sciences · RUSt Petersburg University · RUBroad Institute · USKunming Institute of Zoology · CNUniversity of Copenhagen · DK

Funding

Molecular Mechanisms of Social BehaviorR01GM120782 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KUKEKOVA, ANNA · 2016 to 2019
$1.6M
NIGMS NIH HHS R01 GM120782
6 · The paper itself

Abstract

Strains of red fox (Vulpes vulpes) with markedly different behavioural phenotypes have been developed in the famous long-term selective breeding programme known as the Russian farm-fox experiment. Here we sequenced and assembled the red fox genome and re-sequenced a subset of foxes from the tame, aggressive and conventional farm-bred populations to identify genomic regions associated with the response to selection for behaviour. Analysis of the re-sequenced genomes identified 103 regions with either significantly decreased heterozygosity in one of the three populations or increased divergence between the populations. A strong positional candidate gene for tame behaviour was highlighted: SorCS1, which encodes the main trafficking protein for AMPA glutamate receptors and neurexins and suggests a role for synaptic plasticity in fox domestication. Other regions identified as likely to have been under selection in foxes include genes implicated in human neurological disorders, mouse behaviour and dog domestication. The fox represents a powerful model for the genetic analysis of affiliative and aggressive behaviours that can benefit genetic studies of behaviour in dogs and other mammals, including humans.

Indexed as

AggressionBehavior, AnimalGenomeAnimalsFemaleFoxesMale

Identifiers

PMID30082739
PMCPMC6663081
OpenAlexW2803750243

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.