Evidence map›Paper›PMID 30082683›Full record

ArticleScientific reports2018

Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira.

Olivier Schiettekatte, Antony T Vincent, Christian Malosse, Pierre Lechat, Julia Chamot-Rooke, Frédéric J Veyrier, Mathieu Picardeau, Pascale Bourhy

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Leptospira and Leptospirosis.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. Isolation, Purification, and Characterization of Leptophages.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  3. Bioinformatic Identification of CRISPR-Cas Systems inPathogens (Basel, Switzerland) · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. ExploringMicroorganisms · 2024
    Article
  8. Review
  9. Review
  10. Complete Genome Sequencing ofPathogens (Basel, Switzerland) · 2021
    Article
  11. Bacteriophage infection ofMicrobiology (Reading, England) · 2021
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Olivier SchiettekatteInstitut Pasteur, Unité Biologie des Spirochètes, Paris, France.
Antony T VincentINRS-Institut Armand-Frappier, Bacterial Symbionts Evolution, Laval, Quebec, Canada.
Christian MalosseInstitut Pasteur, Citech, Mass Spectrometry for Biology Utechs, USR, 2000 IP CNRS, Paris, France.
Pierre LechatInstitut Pasteur, Bioinformatics and Biostatistics Hub, C3BI, USR, 3756 IP CNRS, Paris, France.
Julia Chamot-RookeInstitut Pasteur, Citech, Mass Spectrometry for Biology Utechs, USR, 2000 IP CNRS, Paris, France.
Frédéric J VeyrierINRS-Institut Armand-Frappier, Bacterial Symbionts Evolution, Laval, Quebec, Canada.
Mathieu PicardeauInstitut Pasteur, Unité Biologie des Spirochètes, Paris, France.
Pascale BourhyInstitut Pasteur, Unité Biologie des Spirochètes, Paris, France. pbourhy@pasteur.fr.
Institut Pasteur · FRCentre National de la Recherche Scientifique · FRInstitut National de la Recherche Scientifique · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leptospira is a phylogenetically unique group of bacteria, and includes the causative agents of leptospirosis, the most globally prevalent zoonosis. Bacteriophages in Leptospira are largely unexplored. To date, a genomic sequence is available for only one temperate leptophage called LE1. Here, we sequenced and analysed the first genomes of the lytic phages LE3 and LE4 that can infect the saprophyte Leptospira biflexa using the lipopolysaccharide O-antigen as receptor. Bioinformatics analysis showed that the 48-kb LE3 and LE4 genomes are similar and contain 62% genes whose function cannot be predicted. Mass spectrometry led to the identification of 21 and 23 phage proteins in LE3 and LE4, respectively. However we did not identify significant similarities with other phage genomes. A search for prophages close to LE4 in the Leptospira genomes allowed for the identification of a related plasmid in L. interrogans and a prophage-like region in the draft genome of a clinical isolate of L. mayottensis. Long-read whole genome sequencing of the L. mayottensis revealed that the genome contained a LE4 phage-like circular plasmid. Further isolation and genomic comparison of leptophages should reveal their role in the genetic evolution of Leptospira.

Indexed as

BacteriophagesComputational BiologyGenome, ViralLeptospiraMass SpectrometryPlasmidsSequence Analysis, DNA

Identifiers

PMID30082683
PMCPMC6078989
OpenAlexW2885085145

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.