Evidence map›Paper›PMID 30081833›Full record

ArticleBMC genomics2018

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.

Hengfu Yin, Hao-Bo Guo, David J Weston, Anne M Borland, Priya Ranjan, Paul E Abraham, Sara S Jawdy, James Wachira, Gerald A Tuskan, Timothy J Tschaplinski and 7 more

Erratum issuedOpen access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Synthetic crassulacean acid metabolism (SynCAM) for improving water-use efficiency in plants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  5. Article
  6. Review
  7. Article
  8. Engineering Crassulacean Acid Metabolism in CCold Spring Harbor perspectives in biology · 2024
    Review
  9. Review
  10. A chromosome-level genome assembly ofHorticulture research · 2024
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Diversification Slowdown in theFrontiers in plant science · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Hengfu YinBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Hao-Bo GuoDepartment of Biology, University of Tennessee, Knoxville, TN, 37996, USA.
David J WestonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Anne M BorlandBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Priya RanjanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Paul E AbrahamDOE-Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Sara S JawdyBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
James WachiraDepartment of Biology, Morgan State University, Baltimore, MD, 21251, USA.
Gerald A TuskanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Timothy J TschaplinskiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Stan D WullschlegerEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Hong GuoDepartment of Biology, University of Tennessee, Knoxville, TN, 37996, USA.
Robert L HettichDOE-Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Stephen M GrossDOE Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Zhong WangDOE Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Axel ViselDOE Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Xiaohan YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA. yangx@ornl.gov.
Oak Ridge National Laboratory · USJoint Genome Institute · USUniversity of Tennessee at Knoxville · USChinese Academy of Forestry · CNMorgan State University · USUniversity of California, Merced · US

Funding

Department of Energy, Office of Science, Genomic Science Program DE-SC0008834Oak Ridge National Laboratory LDRD 5801
6 · The paper itself

Abstract

backgroundCrassulacean acid metabolism (CAM) enhances plant water-use efficiency through an inverse day/night pattern of stomatal closure/opening that facilitates nocturnal CO

resultsUsing an approach that integrated genomics, gene co-expression networks, comparative genomics and protein structure analyses, we investigated the molecular evolution of CAM as exemplified in Agave. Comparative genomics analyses among C

conclusionsThis work provides evidence of adaptive evolution of CAM related pathways. We showed that the core metabolic components required for CAM are shared by non-vascular plants, but regulatory proteins involved in re-reprogramming of carbon fixation and metabolite transportation appeared more recently. We propose that the accelerated evolution of key proteins together with a diel re-programming of gene expression were required for CAM evolution from C

Indexed as

AgaveCarbonCarbon CycleEvolution, MolecularGene Expression ProfilingGene Regulatory NetworksGenomicsModels, MolecularPhotosynthesisPhylogenyPlant ProteinsProtein Structure, SecondaryCarbonPlant ProteinsCircadian rhythmComparative genomicsCrassulacean acid metabolismPhotosynthesisPositive selectionTranscriptome

Identifiers

PMID30081833
PMCPMC6090859
OpenAlexW2886177605

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.