Evidence map›Paper›PMID 30081820›Full record

ArticleBMC genomics2018

Comparative transcriptome analysis of the interaction between Actinidia chinensis var. chinensis and Pseudomonas syringae pv. actinidiae in absence and presence of acibenzolar-S-methyl.

Vania Michelotti, Antonella Lamontanara, Giampaolo Buriani, Luigi Orrù, Antonio Cellini, Irene Donati, Joel L Vanneste, Luigi Cattivelli, Gianni Tacconi, Francesco Spinelli

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Vania MichelottiCouncil for agriculture research and economics (CREA), Research Centre for Genomics and Bioinformatics, via S. Protaso, 302, CAP, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Antonella LamontanaraCouncil for agriculture research and economics (CREA), Research Centre for Genomics and Bioinformatics, via S. Protaso, 302, CAP, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Giampaolo BurianiDepartment of Agricultural Sciences Alma Mater Studiorum, University of Bologna, viale Fanin 46, 40127, Bologna, Italy.
Luigi OrrùCouncil for agriculture research and economics (CREA), Research Centre for Genomics and Bioinformatics, via S. Protaso, 302, CAP, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Antonio CelliniDepartment of Agricultural Sciences Alma Mater Studiorum, University of Bologna, viale Fanin 46, 40127, Bologna, Italy.
Irene DonatiDepartment of Agricultural Sciences Alma Mater Studiorum, University of Bologna, viale Fanin 46, 40127, Bologna, Italy.
Joel L VannesteThe New Zealand Institute for Plant & Food Research Ltd, Ruakura Research Centre, Bisley Road, Ruakura, Private Bag 3123, Hamilton, 3240, New Zealand.
Luigi CattivelliCouncil for agriculture research and economics (CREA), Research Centre for Genomics and Bioinformatics, via S. Protaso, 302, CAP, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Gianni TacconiCouncil for agriculture research and economics (CREA), Research Centre for Genomics and Bioinformatics, via S. Protaso, 302, CAP, 29017, Fiorenzuola d'Arda, Piacenza, Italy. gianni.tacconi@crea.gov.it.ORCID http://orcid.org/0000-0002-2006-9895
Francesco SpinelliDepartment of Agricultural Sciences Alma Mater Studiorum, University of Bologna, viale Fanin 46, 40127, Bologna, Italy.
University of Bologna · ITConsiglio per la ricerca in agricoltura e l’analisi dell’economia agraria · ITPlant & Food Research · NZ

Funding

FP7 International Cooperation 613678Ministero delle Politiche Agricole Alimentari e Forestali Ardica D.M. 27234/7303/2011Ministero delle Politiche Agricole Alimentari e Forestali Interact D.M. 26045-5/12/2011
6 · The paper itself

Abstract

backgroundSince 2007, bacterial canker caused by Pseudomonas syringae pv. actinidiae (Psa) has become a pandemic disease leading to important economic losses in every country where kiwifruit is widely cultivated. Options for controlling this disease are very limited and rely primarily on the use of bactericidal compounds, such as copper, and resistance inducers. Among the latter, the most widely studied is acibenzolar-S-methyl. To elucidate the early molecular reaction of kiwifruit plants (Actinidia chinensis var. chinensis) to Psa infection and acibenzolar-S-methyl treatment, a RNA seq analysis was performed at different phases of the infection process, from the epiphytic phase to the endophytic invasion on acibenzolar-S-methyl treated and on non-treated plants. The infection process was monitored in vivo by confocal laser scanning microscopy.

resultsDe novo assembly of kiwifruit transcriptome revealed a total of 39,607 transcripts, of which 3360 were differentially expressed during the infection process, primarily 3 h post inoculation. The study revealed the coordinated changes of important gene functional categories such as signaling, hormonal balance and transcriptional regulation. Among the transcription factor families, AP2/ERF, MYB, Myc, bHLH, GATA, NAC, WRKY and GRAS were found differentially expressed in response to Psa infection and acibenzolar-S-methyl treatment. Finally, in plants treated with acibenzolar-S-methyl, a number of gene functions related to plant resistance, such as PR proteins, were modulated, suggesting the set-up of a more effective defense response against the pathogen. Weighted-gene coexpression network analysis confirmed these results.

conclusionsOur work provides an in-depth description of the plant molecular reactions to Psa, it highlights the metabolic pathway related to acibenzolar-S-methyl-induced resistance and it contributes to the development of effective control strategies in open field.

Indexed as

ActinidiaDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantGene Regulatory NetworksPlant DiseasesPlant ProteinsPlant RootsPseudomonas syringaeSequence Analysis, RNAThiadiazolesPlant ProteinsS-methyl benzo(1,2,3)thiadiazole-7-carbothioateThiadiazolesAcibenzolar-S-methylActinidia chinensisHormonal balance (HB)Pseudomonas syringae pv. actinidiaeRNAseqTranscription factors (TFs)

Identifiers

PMID30081820
PMCPMC6090863
OpenAlexW2886271702

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.