Evidence map›Paper›PMID 30081441›Full record

ReviewMolecules (Basel, Switzerland)2018

Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy.

Erik K Larsen, Cristina Olivieri, Caitlin Walker, Manu V S, Jiali Gao, David A Bernlohr, Marco Tonelli, John L Markley, Gianluigi Veglia

Abstract readReview
In one paragraph

Review in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Using NMR spectroscopy to investigate the role played by copper in prion diseases.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2020
    Review
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Erik K LarsenDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA. larse585@umn.edu.
Cristina OlivieriDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA. colivier@umn.edu.
Caitlin WalkerDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA. walk0512@umn.edu.
Manu V SDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA. mvelipar@umn.edu.
Jiali GaoDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA. jgao@umn.edu.
David A BernlohrDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA. bernl001@umn.edu.
Marco TonelliNational Magnetic Resonance Facility at Madison, Madison, WI 53706, USA. tonelli@nmrfam.wisc.edu.
John L MarkleyDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. markley@biochem.wisc.edu.ORCID 0000-0003-1799-6134
Gianluigi VegliaDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA. vegli001@umn.edu.

Funding

TR&D 3: TECHNOLOGY DEVELOPMENT FOR NMR STUDIES OF SMALL MOLECULES (METABOLOMICS, NATURAL PRODUCTS, METABOLITE-PROTEIN INTERACTIONS) pp.537-585 P41GM103399 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BUTCHER, SAMUEL E · 2012 to 2019
$9.4M
Mapping Allosteric Cooperativity in Protein KinasesR01GM100310 · NIGMS · UNIVERSITY OF MINNESOTA · PI VEGLIA, GIANLUIGI · 2012 to 2019
$4.3M
NIGMS NIH HHS P41 GM103399NIGMS NIH HHS R01 GM100310
6 · The paper itself

Abstract

Protein-protein interactions (PPIs) regulate a plethora of cellular processes and NMR spectroscopy has been a leading technique for characterizing them at the atomic resolution. Technically, however, PPIs characterization has been challenging due to multiple samples required to characterize the hot spots at the protein interface. In this paper, we review our recently developed methods that greatly simplify PPI studies, which minimize the number of samples required to fully characterize residues involved in the protein-protein binding interface. This original strategy combines asymmetric labeling of two binding partners and the carbonyl-carbon label selective (CCLS) pulse sequence element implemented into the heteronuclear single quantum correlation (¹H-

Indexed as

Nuclear Magnetic Resonance, BiomolecularCarbon IsotopesIsotope LabelingNitrogen IsotopesProtein BindingProtein ConformationProteinsCarbon IsotopesNitrogen IsotopesProteinsCarbonyl Carbon Label Selective (CCLS)dual carbon label selective (DCLS)nuclear magnetic resonance (NMR)paramagnetic relaxation enhancement (PRE)protein-protein interactions (PPI)residual dipolar coupling (RDC)

Identifiers

PMID30081441
PMCPMC6205158

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.