Evidence map›Paper›PMID 30079703›Full record

ArticleBalkan medical journal2019

Investigation of Gene Expressions of Myeloma Cells in the Bone Marrow of Multiple Myeloma Patients by Transcriptome Analysis

Melda Sarıman, Neslihan Abacı, Sema Sırma Ekmekçi, Aris Çakiris, Ferda Perçin Paçal, Duran Üstek, Mesut Ayer, Mustafa Nuri Yenerel, Sevgi Beşışık, Kıvanç Çefle and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Balkan medical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Melda SarımanDepartment of Genetics, İstanbul University, Aziz Sancar Experimental Medical Research Institute, İstanbul, TurkeyORCID 0000-0003-0898-529X
Neslihan AbacıDepartment of Genetics, İstanbul University, Aziz Sancar Experimental Medical Research Institute, İstanbul, TurkeyORCID 0000-0002-9962-4010
Sema Sırma EkmekçiDepartment of Genetics, İstanbul University, Aziz Sancar Experimental Medical Research Institute, İstanbul, TurkeyORCID 0000-0002-1201-7542
Aris ÇakirisDepartment of Genetics, İstanbul University, Aziz Sancar Experimental Medical Research Institute, İstanbul, TurkeyORCID 0000-0002-6614-9620
Ferda Perçin PaçalDepartment of Genetics, İstanbul University, Aziz Sancar Experimental Medical Research Institute, İstanbul, TurkeyORCID 0000-0001-8583-2217
Duran ÜstekDepartment of Genetics, İstanbul University, Aziz Sancar Experimental Medical Research Institute, İstanbul, TurkeyORCID 0000-0002-0060-2859
Mesut AyerClinic of Hematology, İstanbul Haseki Training and Research Hospital, İstanbul, TurkeyORCID 0000-0003-1977-0104
Mustafa Nuri YenerelDepartment of Hematology, İstanbul Universiy İstanbul School of Medicine, İstanbul, TurkeyORCID 0000-0002-6473-1342
Sevgi BeşışıkDepartment of Internal Medicine, İstanbul Universiy İstanbul School of Medicine, İstanbul, TurkeyORCID 0000-0002-9310-1278
Kıvanç ÇefleDepartment of Internal Medicine, Division of Medical Genetics, İstanbul Universiy İstanbul School of Medicine, İstanbul, TurkeyORCID 0000-0002-9420-4543
Şükrü PalandüzDepartment of Internal Medicine, Division of Medical Genetics, İstanbul Universiy İstanbul School of Medicine, İstanbul, TurkeyORCID 0000-0002-9435-009X
Şükrü ÖztürkDepartment of Internal Medicine, Division of Medical Genetics, İstanbul Universiy İstanbul School of Medicine, İstanbul, TurkeyORCID 0000-0002-8809-7462
Istanbul University · TRHaseki Eğitim ve Araştırma Hastanesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Multiple myeloma is a plasma cell dyscrasia characterized by transformation of B cells into malignant cells. Although there are data regarding the molecular pathology of multiple myeloma, the molecular mechanisms of the disease have not been fully elucidated. Aims: To investigate the gene expression profiles in bone marrow myeloma cells via RNA-sequencing technology. Study Design: Cell study. Methods: Myeloma cells from four patients with untreated multiple myeloma and B cells from the bone marrow of four healthy donors were sorted using a FACSAria II flow cytometer. The patient pool of myeloma cells and the control pool of B cells were the two comparative groups. A transcriptome analysis was performed and the results were analyzed using bioinformatics tools. Results: In total, 18.806 transcripts (94.4%) were detected in the pooled multiple myeloma patient cells. A total of 992 regions were detected as new exon candidates or alternative splicing regions. In addition, 490 mutations (deletions or insertions), 1.397 single nucleotide variations, 415 fusion transcripts, 132 frameshift mutations, and 983 fusions, which were reported before in the National Center for Biotechnology Information, were detected with unknown functions in patients. A total of 35.268 transcripts were obtained (71%) (25.355 transcripts were defined previously) in the control pool. In this preliminary study, the first 50 genes were analyzed with the MSigDB, Enrichr, and Panther gene set enrichment analysis programs. The molecular functions, cellular components, pathways, and biological processes of the genes were obtained and statistical values were determined using bioinformatics tools and are presented as a supplemental file. Conclusion:

Indexed as

Bone MarrowFlow CytometryGene ExpressionGene Expression ProfilingHumansMultiple MyelomaSequence Analysis, RNATurkeyFlow cytometrygene expresionmultiple myelomaplasma cell dyscrasiastranscriptome analyses

Identifiers

PMID30079703
PMCPMC6335938
OpenAlexW2886682891

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.