Evidence map›Paper›PMID 30078640›Full record

ArticleNeurobiology of aging2018

An alternative transcript of the Alzheimer's disease risk gene SORL1 encodes a truncated receptor.

Jenny Blechingberg, Annemarie Svane Aavild Poulsen, Mads Kjølby, Giulia Monti, Mariet Allen, Anne Kathrine Ivarsen, Sarah J Lincoln, Gangadaar Thotakura, Christian B Vægter, Nilüfer Ertekin-Taner and 2 more

Abstract read
In one paragraph

Article in Neurobiology of aging, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Sorting Out the Role of theJournal of Alzheimer's disease reports · 2020
    Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jenny BlechingbergDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark.
Annemarie Svane Aavild PoulsenDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark.
Mads KjølbyDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark; Danish Diabetes Academy, Novo Nordisk Foundation, Aarhus University, Aarhus, Denmark.
Giulia MontiDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark.
Mariet AllenDepartment of Neuroscience, Mayo Clinic, FL, USA.
Anne Kathrine IvarsenDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark.
Sarah J LincolnDepartment of Neuroscience, Mayo Clinic, FL, USA.
Gangadaar ThotakuraDepartment of Neuroscience, Mayo Clinic, FL, USA.
Christian B VægterDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark.
Nilüfer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic, FL, USA.
Anders NykjærDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark; The Lundbeck Foundation Research Center MIND, Aarhus, Denmark; The Danish Research Foundation Center PROMEMO, Department of Biomedicine, Aarhus, Denmark; Department of Neurosurgery, Aarhus University Hospital, Aarhus, Denmark.
Olav M AndersenDanish Research Institute of Translational Neuroscience (DANDRITE) Nordic-EMBL Partnership, Aarhus, Denmark. Electronic address: o.andersen@biomed.au.dk.

Funding

Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, PETERS, METTE · 2013 to 2022
$24.6M
Integrative translational discovery of vascular risk factors in aging and dementiaRF1AG051504 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN, ERTEKIN-TANER, NILUFER · 2015 to 2019
$9.8M
Gene discovery in PSP by transcriptome, neuropathology and sequence analysisR01NS080820 · NINDS · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2013 to 2017
$1.8M
Genome wide association study of gene expression levels in Alzheimer's diseaseR01AG032990 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2009 to 2011
$932k
NIA NIH HHS R01 AG032990NIA NIH HHS RF1 AG051504NIA NIH HHS U01 AG046139NINDS NIH HHS R01 NS080820
6 · The paper itself

Abstract

SORL1 encodes a 250-kDa protein named sorLA, a functional sorting receptor for the amyloid precursor protein (APP). Several single nucleotide polymorphisms of the gene SORL1, encoding sorLA, are genetically associated with Alzheimer's disease (AD). In the existing literature, SORL1 is insufficiently described at the transcriptional level, and there is very limited amount of functional data defining different transcripts. We have characterized a SORL1 transcript containing a novel exon 30B. The transcript is expressed in most brain regions with highest expression in the temporal lobe and hippocampus. Exon 30B is spliced to exon 31, leading to a mature transcript that encodes an 829 amino acid sorLA receptor. This receptor variant lacks the binding site for APP and is unlikely to function in APP sorting. This transcript is expressed in equal amounts in the cerebellum from AD and non-AD individuals. Our data describe a transcript that encodes a truncated sorLA receptor, suggesting novel neuronal functions for sorLA and that alternative transcription provides a mechanism for SORL1 activity regulation.

Indexed as

AgedAlzheimer DiseaseBrainCell LineExonsFemaleGenetic Predisposition to DiseaseHumansLDL-Receptor Related ProteinsMaleMembrane Transport ProteinsNeuronsPolymorphism, Single NucleotideRisk FactorsSequence Analysis, DNALDL-Receptor Related ProteinsMembrane Transport ProteinsSORL1 protein, humanAlternative transcriptionAlzheimer's disease risk geneExon 30BSORL1SorLA

Identifiers

PMID30078640
PMCPMC6769419

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.