Evidence map›Paper›PMID 30078635›Full record

ArticleCell chemical biology2018

Resurrecting the Bacterial Tyrosyl-tRNA Synthetase/tRNA Pair for Expanding the Genetic Code of Both E. coli and Eukaryotes.

James S Italia, Christopher Latour, Chester J J Wrobel, Abhishek Chatterjee

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 67 citations in OpenAlex.

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  17. Fluorosulfate as a Latent Sulfate in Peptides and Proteins.Journal of the American Chemical Society · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

James S ItaliaDepartment of Chemistry, Boston College, 2609 Beacon Street, Chestnut Hill, MA 02467, USA.
Christopher LatourDepartment of Chemistry, Boston College, 2609 Beacon Street, Chestnut Hill, MA 02467, USA.
Chester J J WrobelDepartment of Chemistry, Boston College, 2609 Beacon Street, Chestnut Hill, MA 02467, USA.
Abhishek ChatterjeeDepartment of Chemistry, Boston College, 2609 Beacon Street, Chestnut Hill, MA 02467, USA. Electronic address: abhishek.chatterjee@bc.edu.
Boston College · US

Funding

A novel approach to define the roles of oxidative and nitrative post-trasnlational modifications of tryptophan in human biologyR01GM124319 · NIGMS · BOSTON COLLEGE · PI CHATTERJEE, ABHISHEK · 2017 to 2019
$916k
NIGMS NIH HHS R01 GM124319
6 · The paper itself

Abstract

The bacteria-derived tyrosyl-tRNA synthetase (TyrRS)/tRNA pair was first used for unnatural amino acid (Uaa) mutagenesis in eukaryotic cells over 15 years ago. It provides an ideal platform to genetically encode numerous useful Uaas in eukaryotes. However, this pair has been engineered to charge only a small collection of Uaas to date. Development of Uaa-selective variants of this pair has been limited by technical challenges associated with a yeast-based directed evolution platform, which is currently required to alter its substrate specificity. Here we overcome this limitation by enabling its directed evolution in an engineered strain of E. coli (ATMY), where the endogenous TyrRS/tRNA pair has been functionally replaced with an archaeal counterpart. The facile E. coli-based selection system enabled rapid engineering of this pair to develop variants that selectively incorporate various Uaas, including p-boronophenylalanine, into proteins expressed in mammalian cells as well as in the ATMY strain of E. coli.

Indexed as

Genetic CodeAnimalsArchaeal ProteinsBoron CompoundsDirected Molecular EvolutionEscherichia coliEscherichia coli ProteinsHEK293 CellsHumansModels, MolecularPhenylalanineRNA, TransferTyrosine-tRNA Ligase4-boronophenylalanineArchaeal ProteinsBoron CompoundsEscherichia coli ProteinsPhenylalanineRNA, TransferTyrosine-tRNA Ligaseengineered bacterial strainseukaryotic genetic code expansiongenetic code expansionmammalian genetic code expansionnon-canonical amino acidsunnatural amino acids

Identifiers

PMID30078635
PMCPMC6456809
OpenAlexW2885139429

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.