Evidence map›Paper›PMID 30076781›Full record

ArticleThe New phytologist2019

Genetic map-guided genome assembly reveals a virulence-governing minichromosome in the lentil anthracnose pathogen Colletotrichum lentis.

Vijai Bhadauria, Ron MacLachlan, Curtis Pozniak, Aurelie Cohen-Skalie, Li Li, Jerlene Halliday, Sabine Banniza

Abstract read
In one paragraph

Article in The New phytologist, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Nanopore Data-Driven T2T Genome Assemblies ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. Article
  5. Comparative Genomic Analyses ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. The Molecular Genetics and Genomics of Plant-Pathogen Interactions.International journal of molecular sciences · 2024
    Article
  9. Article
  10. What lies behind the large genome ofFrontiers in fungal biology · 2024
    Article
  11. Article
  12. Comparative Genomic Analysis ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Chromosome-level analysis of theFrontiers in microbiology · 2023
    Article
  18. Gapless reference genome assembly ofFrontiers in plant science · 2022
    Article
  19. MycoKeys · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Vijai BhadauriaCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.ORCID 0000-0002-9311-049X
Ron MacLachlanCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.
Curtis PozniakCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.
Aurelie Cohen-SkalieCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.
Li LiCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.
Jerlene HallidayCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.
Sabine BannizaCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada.

Funding

National Science and Engineering Research Council of Canada (NSERC) DiscoverySaskatchewan Pulse GrowersWestern Grains Research Foundation, Canada
6 · The paper itself

Abstract

Colletotrichum lentis causes anthracnose, which is a serious disease on lentil and can account for up to 70% crop loss. Two pathogenic races, 0 and 1, have been described in the C. lentis population from lentil. To unravel the genetic control of virulence, an isolate of the virulent race 0 was sequenced at 1481-fold genomic coverage. The 56.10-Mb genome assembly consists of 50 scaffolds with N

Indexed as

Chromosomes, FungalGenome, FungalChromosome MappingColletotrichumGenetic LinkageLens PlantPlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociVirulenceconditionally dispensable chromosomesdisease resistanceeffectorsgenomicsgenotyping-by-whole-genome shotgun sequencinglegumespathogens

Identifiers

PMID30076781
PMCPMC6668012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.