Evidence map›Paper›PMID 30076522›Full record

ArticleMolecular biology reports2018

Heterologous expression and characterization of the aspartic endoprotease Pep4um from Ustilago maydis, a homolog of the human Chatepsin D, an important breast cancer therapeutic target.

Margarita Juárez-Montiel, Pedro Tesillo-Moreno, Ana Cruz-Angeles, Valentina Soberanes-Gutiérrez, Griselda Chávez-Camarillo, J Antonio Ibarra, César Hernández-Rodríguez, Lourdes Villa-Tanaca

Abstract read
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In one paragraph

Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Characterization of Aspartic Proteases fromJournal of fungi (Basel, Switzerland) · 2023
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Margarita Juárez-MontielDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
Pedro Tesillo-MorenoDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
Ana Cruz-AngelesDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
Valentina Soberanes-GutiérrezDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
Griselda Chávez-CamarilloDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
J Antonio IbarraDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
César Hernández-RodríguezDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico.
Lourdes Villa-TanacaDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, DF, Mexico. lourdesvilla@hotmail.com.ORCID http://orcid.org/0000-0003-0055-2991
Instituto Politécnico Nacional · MX

Funding

Secretaría de Investigación y Posgrado, Instituto Politécnico Nacional (MX) SIP-IPN 20171553Secretaría de Investigación y Posgrado, Instituto Politécnico Nacional (MX) SIP-IPN 20181873
6 · The paper itself

Abstract

The pep4um gene (um04926) of Ustilago maydis encodes a protein related to either vacuolar or lysosomal aspartic proteases. Bioinformatic analysis of the Pep4um protein revealed that it is a soluble protein with a signal peptide suggesting that it likely passes through the secretory pathway, and it has two probable self-activation sites, which are similar to those in Saccharomyces cerevisiae PrA. Moreover, the active site of the Pep4um has the two characteristic aspartic acid residues of aspartyl proteases. The pep4um gene was cloned, expressed in Pichia pastoris and a 54 kDa recombinant protein was observed. Pep4um-rec was confirmed to be an aspartic protease by specifically inhibiting its enzymatic activity with pepstatin A. Pep4um-rec enzymatic activity on acidic hemoglobin was optimal at pH 4.0 and at 40 °C. To the best of our knowledge this is the first report about the heterologous expression of an aspartic protease from a basidiomycete. An in-depth in silico analysis suggests that Pep4um is homolog of the human cathepsin D protein. Thus, the Pep4um-rec protein may be used to test inhibitors of human cathepsin D, an important breast cancer therapeutic target.

Indexed as

Aspartic Acid EndopeptidasesCatalytic DomainCathepsin DCloning, MolecularComputer SimulationFungal ProteinsHumansModels, MolecularMolecular WeightPhylogenyPichiaProtein Sorting SignalsProtein Structure, TertiarySequence Homology, Amino AcidUstilagoAspartic Acid EndopeptidasesCathepsin DCTSD protein, humanFungal ProteinsProtein Sorting SignalsAspartyl acid endoproteaseCathepsin D homologPep4um recombinat proteinPepstatin APichia pastorisUstilago maydis

Identifiers

PMID30076522
OpenAlexW2886643245

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.