Evidence map›Paper›PMID 30076049›Full record

ArticleBioorganic & medicinal chemistry letters2018

Activating frataxin expression by single-stranded siRNAs targeting the GAA repeat expansion.

Xiulong Shen, Audrius Kilikevicius, Daniel O'Reilly, Thazha P Prakash, Masad J Damha, Frank Rigo, David R Corey

Open access · hybridAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Antisense Drugs Make Sense for Neurological Diseases.Annual review of pharmacology and toxicology · 2021
    Review
  10. Article
  11. Review
  12. Molecular Mechanisms and Therapeutics for the GAA·TTC Expansion Disease Friedreich Ataxia.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2019
    Review
  13. Article
  14. Article
  15. Biomaterials for vaccine-based cancer immunotherapy.Journal of controlled release : official journal of the Controlled Release Society · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Xiulong ShenDepartment of Pharmacology, UT Southwestern Medical Center at Dallas, Dallas, TX 75390, United States; Department of Biochemistry, UT Southwestern Medical Center at Dallas, Dallas, TX 75390, United States.
Audrius KilikeviciusDepartment of Pharmacology, UT Southwestern Medical Center at Dallas, Dallas, TX 75390, United States; Department of Biochemistry, UT Southwestern Medical Center at Dallas, Dallas, TX 75390, United States.
Daniel O'ReillyDepartment of Chemistry, McGill University, Montreal, QC H3A 0B8, Canada.
Thazha P PrakashIonis Pharmaceuticals, Carlsbad, CA 92010, United States.
Masad J DamhaDepartment of Chemistry, McGill University, Montreal, QC H3A 0B8, Canada.
Frank RigoIonis Pharmaceuticals, Carlsbad, CA 92010, United States.
David R CoreyDepartment of Pharmacology, UT Southwestern Medical Center at Dallas, Dallas, TX 75390, United States; Department of Biochemistry, UT Southwestern Medical Center at Dallas, Dallas, TX 75390, United States. Electronic address: david.corey@utsouthwestern.edu.
Southwestern Medical Center · USIonis Pharmaceuticals (United States) · USMcGill University · CA

Funding

Recognition of Cellular Targets by single and double-stranded nucleic acidsR35GM118103 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI David R Corey · 2016 to 2026
$5.7M
NIGMS NIH HHS R35 GM118103
6 · The paper itself

Abstract

Friedreich's ataxia (FRDA) is an incurable neurodegenerative disorder caused by reduced expression of the mitochondrial protein frataxin (FXN). The genetic cause of the disease is an expanded GAA repeat within the FXN gene. Agents that increase expression of FXN protein are a potential approach to therapy. We previously described anti-trinucleotide GAA duplex RNAs (dsRNAs) and antisense oligonucleotides (ASOs) that activate FXN protein expression in multiple patient derived cell lines. Here we test two distinct series of compounds for their ability to increase FXN expression. ASOs with butane linkers showed low potency, which is consistent with the low T

Indexed as

Cell LineDose-Response Relationship, DrugFrataxinFriedreich AtaxiaHumansIron-Binding ProteinsMolecular StructureRNA, Small InterferingStructure-Activity RelationshipTrinucleotide Repeat ExpansionFrataxinIron-Binding ProteinsRNA, Small InterferingAntisense oligonucleotidesFrataxinFriedreich's ataxiaGene activationss-siRNAs

Identifiers

PMID30076049
PMCPMC6129981
OpenAlexW2883699765

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.