ArticleScientific reports2018
Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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42 citing papers in PubMed, 100 citations in OpenAlex.
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- Unravelling drought stress adaptation in sugarcane interspecific hybrids: A multi-level analysis.PloS one · 2025Article
- Interactions between Brassinosteroids and Strigolactones in Alleviating Salt Stress in Maize.International journal of molecular sciences · 2024Article
- GhiPLATZ17 and GhiPLATZ22, zinc-dependent DNA-binding transcription factors, promote salt tolerance in upland cotton.Plant cell reports · 2024Article
- Genes expression profiles in vascular cambium of Eucalyptus urophylla × Eucalyptus grandis at different ages.BMC plant biology · 2023Article
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- Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato.Plants (Basel, Switzerland) · 2023Article
- Genome-wide analysis of MdPLATZ genes and their expression during axillary bud outgrowth in apple (Malus domestica Borkh.).BMC genomics · 2023Article
- Transcriptomic and Proteomic Landscape of Sugarcane Response to Biotic and Abiotic Stressors.International journal of molecular sciences · 2023Review
- Genome-Wide Identification and Phylogenetic and Expression Analyses of theInternational journal of molecular sciences · 2023Article
- Design, execution, and interpretation of plant RNA-seq analyses.Frontiers in plant science · 2023Review
- Identification and characterization ofFrontiers in plant science · 2023Article
- Identification of the egusi seed trait locus (eg) and its suppressor gene associated with the thin seed coat trait in watermelon.Frontiers in plant science · 2023Article
- Integrative System Biology Analysis of Transcriptomic Responses to Drought Stress in Soybean (Genes · 2022Article
- Review
- Allele expression biases in mixed-ploid sugarcane accessions.Scientific reports · 2022Article
- Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Integrated Metabolomics and Transcriptome Analyses Unveil Pathways Involved in Sugar Content and Rind Color of Two Sugarcane Varieties.Frontiers in plant science · 2022Article
- Spatio-Temporal Modification of Lignin Biosynthesis in Plants: A Promising Strategy for Lignocellulose Improvement and Lignin Valorization.Frontiers in bioengineering and biotechnology · 2022Review
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Authors and funding
5 authors at 1 institution in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sugarcane (Saccharum spp. hybrids) is a potential lignocellulosic feedstock for biofuel production due to its exceptional biomass accumulation ability, high convertible carbohydrate content and a favorable energy input/output ratio. Genetic modification of biofuel traits to improve biomass conversion requires an understanding of the regulation of carbohydrate and lignin biosynthesis. RNA-Seq was used to investigate the transcripts differentially expressed between the immature and mature tissues of the sugarcane genotypes varying in fiber content. Most of the differentially expressed transcripts were found to be down-regulated during stem maturation, highlighting their roles in active secondary cell-wall development in the younger tissues of both high and low fiber genotypes. Several cellulose synthase genes (including CesA2, CesA4, CesA7 and COBRA-like protein), lignin biosynthesis-related genes (ρ-coumarate 3-hydroxylase, ferulate 5-hydroxylase, cinnamyl alcohol dehydrogenase and gentiobiase) and transcription regulators for the secondary cell-wall synthesis (including LIM, MYB, PLATZ, IAA24, C2H2 and C2C2 DOF zinc finger gene families) were exclusively differentially expressed between immature and mature tissues of high fiber genotypes. These findings reveal target genes for subsequent research on the regulation of cellulose and lignin metabolism.
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